PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0548s00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 236aa MW: 25688.4 Da PI: 8.8167 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 81.2 | 1.4e-25 | 65 | 118 | 1 | 54 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelse 54 +Cq+egC++dlseak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr +l e Vang0548s00010.1 65 RCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLWSLGE 118 6***********************************************999876 PP | |||||||
2 | SBP | 47.8 | 3.9e-15 | 139 | 170 | 47 | 78 |
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 s fh lsefD++krsCr+rLa+hn+rrrk+q+ Vang0548s00010.1 139 SGFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 170 78***************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.5E-29 | 61 | 155 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 25.607 | 63 | 168 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-23 | 64 | 118 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.6E-19 | 66 | 117 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.71E-11 | 139 | 171 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.9E-8 | 140 | 167 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSKSEDVTSP INFECSGHGL GPGPGLGLNL GGRTYFAASN EDILDRFYRC KTVESVSTVA 60 SNLPRCQAEG CNTDLSEAKH YHRRHKVCEF HSKAATVIAA GLTQRFCQQC SRLWSLGEGV 120 LHNYEFATGR CSLNQSLASG FHLLSEFDNG KRSCRKRLAD HNRRRRKTQQ ATQDIHKSQP 180 SLDNVTWSSS ESGAQSSSSM KVAVSPPDYF QQNRGTSSTS SSGSLFFSSG ANLHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-26 | 57 | 167 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0548s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417868.1 | 1e-173 | PREDICTED: squamosa promoter-binding-like protein 8 isoform X1 | ||||
Swissprot | Q8GXL3 | 1e-53 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0L9U775 | 1e-105 | A0A0L9U775_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RVT6 | 1e-105 | A0A0S3RVT6_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140981.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6801 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 5e-50 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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