PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang04g14730.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 467aa MW: 51420.9 Da PI: 7.1413 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.8e-17 | 126 | 175 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Vang04g14730.2 126 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 175 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.6 | 3.1e-13 | 218 | 273 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + + ++++++lg f+++ eAa+a+++a+ k +g Vang04g14730.2 218 SKYRGVTLHK-CGRWEARMGQFLGKKvyRCRYIYLGLFDSELEAARAYDRAAIKCNG 273 89********.7******776544448777**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.04E-16 | 126 | 185 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.3E-9 | 126 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.33E-12 | 127 | 185 | No hit | No description |
SMART | SM00380 | 5.3E-33 | 127 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-17 | 127 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 127 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-15 | 218 | 283 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-9 | 218 | 273 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.89E-24 | 218 | 283 | No hit | No description |
SMART | SM00380 | 1.1E-26 | 219 | 287 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.685 | 219 | 281 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-13 | 219 | 281 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 220 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 263 | 283 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 467 aa Download sequence Send to blast |
MLDLNLNADS PSDNNHTPPL SVAQMESSGS FNSSVVNAAD TDDSCSYGDA VAYNFAILNS 60 NTASPSAGES SVRTIQLFPA TDSGVSPTWL DFSTKVDQHG AASEQRITPR QPLVKKSRRG 120 PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI 180 NFNVSDYDED IKQMSNFTKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG 240 KKVYRCRYIY LGLFDSELEA ARAYDRAAIK CNGREAVTNF EPSIYEGEVI SQSDNNEDGK 300 QNLDLNLGIA PPSYSDSQIK NTPSNGSGLK GPPSWDDIPV EKRFMFEHSG SRSLNVQASQ 360 GIYRVSGHHP STWNGSNFFP IYEETAIEKR MEAGPMPNWA WQVQGPYGGP TLTPPFSTAA 420 SSGFPSTIIP SAADTQIHFP NMTFLHSHFP PSITNSGTVS PFFIGS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang04g14730.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017415912.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Swissprot | B8AMA9 | 1e-107 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | A0A0S3RYS5 | 0.0 | A0A0S3RYS5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007162717.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-108 | related to AP2.7 |