PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g14730.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 471aa    MW: 51946.4 Da    PI: 7.1411
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g14730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17126175155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Vang04g14730.1 126 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 175
                     78*******************......55************************997 PP
2AP230.11.2e-09218265147
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaai 47 
                     s+y+GV+ +k  grW+A+   +   +  ++++++lg f+++ eAa+ + 
  Vang04g14730.1 218 SKYRGVTLHK-CGRWEARMGQFLGKKvyRCRYIYLGLFDSELEAARFYQ 265
                     89********.7******776544448777**********99***9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-16126185IPR016177DNA-binding domain
PfamPF008475.3E-9126175IPR001471AP2/ERF domain
CDDcd000189.68E-12127185No hitNo description
PROSITE profilePS5103217.794127183IPR001471AP2/ERF domain
SMARTSM003805.3E-33127189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-17127184IPR001471AP2/ERF domain
PfamPF008471.4E-5218269IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-11218287IPR016177DNA-binding domain
CDDcd000187.63E-22218287No hitNo description
PROSITE profilePS5103211.864219285IPR001471AP2/ERF domain
SMARTSM003801.1E-22219291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-10219285IPR001471AP2/ERF domain
PRINTSPR003675.5E-6220231IPR001471AP2/ERF domain
PRINTSPR003675.5E-6267287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MLDLNLNADS PSDNNHTPPL SVAQMESSGS FNSSVVNAAD TDDSCSYGDA VAYNFAILNS  60
NTASPSAGES SVRTIQLFPA TDSGVSPTWL DFSTKVDQHG AASEQRITPR QPLVKKSRRG  120
PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA IKFRGVDADI  180
NFNVSDYDED IKQMSNFTKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG  240
KKVYRCRYIY LGLFDSELEA ARFYQSAYDR AAIKCNGREA VTNFEPSIYE GEVISQSDNN  300
EDGKQNLDLN LGIAPPSYSD SQIKNTPSNG SGLKGPPSWD DIPVEKRFMF EHSGSRSLNV  360
QASQGIYRVS GHHPSTWNGS NFFPIYEETA IEKRMEAGPM PNWAWQVQGP YGGPTLTPPF  420
STAASSGFPS TIIPSAADTQ IHFPNMTFLH SHFPPSITNS GTVSPFFIGS *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g14730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415912.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotB8AMA91e-105AP22_ORYSI; APETALA2-like protein 2
TrEMBLA0A0S3RYS50.0A0A0S3RYS5_PHAAN; Uncharacterized protein
STRINGXP_007162717.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-106related to AP2.7