PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g12980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 185aa MW: 20968 Da PI: 8.9474 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97 | 2.8e-30 | 36 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+G+rF+Ptde l +yL+k++ +++l+ + i++ d++++ePw+Lp k +w +fF +++ g+ ++r + +g W+ kd+ev Vang04g12980.1 36 LPVGYRFDPTDEILAGYYLRKRIMAHPLPN-DLIQDYDVHQTEPWELPGGGKC--MNWqrFFFYDVRSR-VLGNPEKRDAGKGQWEMVEKDEEVG 126 799*************************99.99***************43333..34443555555444.4688999999*************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++++ k +Lvf+k++ ++ kt+Wvmhe+rl Vang04g12980.1 127 FSDEQVIAKKSVLVFWKAKGSSLAKTKWVMHEFRL 161 999******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-32 | 29 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.704 | 36 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-16 | 37 | 161 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
LISFITSPSS IQSQKDFGVA SLMEVLNPVG GDTYRLPVGY RFDPTDEILA GYYLRKRIMA 60 HPLPNDLIQD YDVHQTEPWE LPGGGKCMNW QRFFFYDVRS RVLGNPEKRD AGKGQWEMVE 120 KDEEVGFSDE QVIAKKSVLV FWKAKGSSLA KTKWVMHEFR LALKSNPSKN THHAPPPRIT 180 LTVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-16 | 36 | 161 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g12980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-142 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417586.1 | 1e-108 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0L9U6B5 | 1e-107 | A0A0L9U6B5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RVW8 | 1e-107 | A0A0S3RVW8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007161703.1 | 4e-90 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 5e-27 | NAC domain containing protein 83 |