PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g11540.2

Common Name

LR48_Vigan03g134300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 68aa MW: 7894.02 Da PI: 4.6858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g11540.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.1e-05	1	33	23	55
HHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPk.askapskKlsKaeiLekAveYIksLq 55 L+ llP+ + + ++ + s + iL++++ +I+ Lq Vang04g11540.2 1 LQLLLPQiN-QRDNSRQSASKILKETCCHIRRLQ 33 677999966.889999*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.22E-6	1	51	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-6	1	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 68 aa Download sequence Send to blast
LQLLLPQINQ RDNSRQSASK ILKETCCHIR RLQEEVEQLS EKLSELMDSV DMNDIDRQIL 60 QNILQQC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g11540.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	6e-84	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007140557.1	2e-38	hypothetical protein PHAVU_008G122600g
TrEMBL	A0A0L9U5C8	3e-38	A0A0L9U5C8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RUW5	3e-38	A0A0S3RUW5_PHAAN; Uncharacterized protein
STRING	XP_007140557.1	9e-38	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	3e-14	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]