PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g10070.2

Common Name

LR48_Vigan03g118100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 564aa MW: 61086.8 Da PI: 6.7028

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g10070.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.8e-09	378	425	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Vang04g10070.2 378 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 425 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-17	372	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.38E-10	372	429	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-16	374	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	374	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-6	378	425	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	380	430	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
LRSYFISSFM ENQFFLNAPQ LHFDPSPPPC PPSWHSLSSP MDVQVLNCSA ERTQDCFYTP 60 AWDKSTDHAV QFDSALSSMV SSPAASNSNM SSENFVIREL IGKLGNIGGA SDEISPHSQP 120 LVPASSYING NNSTNTSCYS TPLSSPPKLS LNKIPTMMNH LVKEGMPPSL NSSVAEFSTD 180 PGFAERAAKF SCFGSRSFNG RTTQLGPSNA ELTHRSSPLV ENGKLPRVSS SPSLKVLGSQ 240 MSAQENKNSP LQDQMEVANS QEESTISEQI PNGDNGVKPS PYANSRKRKG PSKGKAKETS 300 TPTNPPMAAE ASEDSNAKRS KPNEGEGNEN GQVKAEEESK GVTSNTNDDK QNKSNSKPPE 360 PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY 420 VQSLQRQVEF LSMKLASVNT KLDFSIESLI SKDIFQSNNS LAQPIFPLDS SATAFYGQHP 480 QQNPATHSNI PNGTVSHTSV DPLDTGLCQS IGMQLSHLNA FNEGASQYPI AFSEGDLHTI 540 VQMGFGQTAN RKTPVQSQSF NGN*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

LRSYFISSFM ENQFFLNAPQ LHFDPSPPPC PPSWHSLSSP MDVQVLNCSA ERTQDCFYTP  60
AWDKSTDHAV QFDSALSSMV SSPAASNSNM SSENFVIREL IGKLGNIGGA SDEISPHSQP  120
LVPASSYING NNSTNTSCYS TPLSSPPKLS LNKIPTMMNH LVKEGMPPSL NSSVAEFSTD  180
PGFAERAAKF SCFGSRSFNG RTTQLGPSNA ELTHRSSPLV ENGKLPRVSS SPSLKVLGSQ  240
MSAQENKNSP LQDQMEVANS QEESTISEQI PNGDNGVKPS PYANSRKRKG PSKGKAKETS  300
TPTNPPMAAE ASEDSNAKRS KPNEGEGNEN GQVKAEEESK GVTSNTNDDK QNKSNSKPPE  360
PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY  420
VQSLQRQVEF LSMKLASVNT KLDFSIESLI SKDIFQSNNS LAQPIFPLDS SATAFYGQHP  480
QQNPATHSNI PNGTVSHTSV DPLDTGLCQS IGMQLSHLNA FNEGASQYPI AFSEGDLHTI  540
VQMGFGQTAN RKTPVQSQSF NGN*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g10070.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417082.1	0.0	PREDICTED: transcription factor bHLH62-like
TrEMBL	A0A0L9U5U7	0.0	A0A0L9U5U7_PHAAN; Uncharacterized protein
STRING	XP_007140690.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-101	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]