PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g10070.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 569aa    MW: 61611.4 Da    PI: 6.7028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g10070.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-09378425455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Vang04g10070.1 378 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 425
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.41E-10372429No hitNo description
SuperFamilySSF474598.37E-17372442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16374442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6378425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
LRSYFISSFM ENQFFLNAPQ LHFDPSPPPC PPSWHSLSSP MDVQVLNCSA ERTQDCFYTP  60
AWDKSTDHAV QFDSALSSMV SSPAASNSNM SSENFVIREL IGKLGNIGGA SDEISPHSQP  120
LVPASSYING NNSTNTSCYS TPLSSPPKLS LNKIPTMMNH LVKEGMPPSL NSSVAEFSTD  180
PGFAERAAKF SCFGSRSFNG RTTQLGPSNA ELTHRSSPLV ENGKLPRVSS SPSLKVLGSQ  240
MSAQENKNSP LQDQMEVANS QEESTISEQI PNGDNGVKPS PYANSRKRKG PSKGKAKETS  300
TPTNPPMAAE ASEDSNAKRS KPNEGEGNEN GQVKAEEESK GVTSNTNDDK QNKSNSKPPE  360
PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY  420
VQSLQRQVEF LSMKLASVNT KLDFSIESLI SKDIFQSNNS LAQPIFPLDS SATAFYGQHP  480
QQNPATHSNI PNGTVSHTSV DPLDTGLCQS IGMQLSHLNA FNEGASQYPI AFSEGDLHTI  540
VQMGFGQTAN RKTPVQSQSF NGSNQVPL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g10070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417082.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A0S3RUU30.0A0A0S3RUU3_PHAAN; Uncharacterized protein
STRINGXP_007140690.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-102bHLH family protein