PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g08310.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 471aa MW: 52202 Da PI: 4.9977 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.6e-18 | 12 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+WvAeIr+p + g k r +lg+f ta eAa a+++a+k+++g Vang04g08310.3 12 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 69 79*****998.**********855.55976666************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.0E-13 | 12 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.72E-31 | 12 | 78 | No hit | No description |
SMART | SM00380 | 5.5E-34 | 13 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-28 | 13 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 13 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.654 | 13 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MRGKGGPQNS DCKFRGVRQR IWGKWVAEIR EPINGKLVGE KANRLWLGTF STALEAALAY 60 DEAAKAMYGP SARLNFPDPS VEPIHSNGSS SSSGCDKKSP SGSSENDGDV ERAESERNLH 120 QPNEEKPRFS EVGVFEVTQE KLVLCGGCVA DDSIEELKEM TSGFEQCQTS EECKAITSKN 180 IKSEIPEESE GIERELERVL KNSGIGEEDN LLHNEPLDIA MNTGANYCSS SDAAEHDIVE 240 KSEETRGESV ETLKQCELSC SNHCLGCMHN MLPDSNSKPH SEHFNNDRSE ASIARKHTEE 300 VISEILGLCH SKCLKINHDQ SPHEHYRTEH FDDTRTKLKC LECKLRAHSI HYKTQAPIVG 360 DSNYPSMQGI HMFGSGTVGP IESMSQIDAM NNINTSRNSL PGFSSGHSRK LCDLSQQLHK 420 LGGCLPEHWN NMQFADLEVG YDYSFLNPDY DFGLLEEKKL LDVCFPQIGS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-16 | 14 | 77 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-16 | 14 | 77 | 6 | 63 | ATERF1 |
3gcc_A | 2e-16 | 14 | 77 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g08310.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417707.1 | 0.0 | PREDICTED: uncharacterized protein LOC108328359 | ||||
TrEMBL | A0A0S3RTW4 | 0.0 | A0A0S3RTW4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140202.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38340.1 | 2e-24 | ERF family protein |