PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g08310.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 510aa    MW: 56658 Da    PI: 5.228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g08310.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-1851108155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta eAa a+++a+k+++g
  Vang04g08310.2  51 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 108
                     79*****998.**********855.55976666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.08E-3151117No hitNo description
PfamPF008473.4E-1351108IPR001471AP2/ERF domain
PROSITE profilePS5103221.65452116IPR001471AP2/ERF domain
SMARTSM003805.5E-3452122IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1852117IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-2852117IPR001471AP2/ERF domain
PRINTSPR003672.4E-85364IPR001471AP2/ERF domain
PRINTSPR003672.4E-88298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
LENTLEKWKE YNRQQQLGSR ENGVEVIQKA PAKGSRKGCM RGKGGPQNSD CKFRGVRQRI  60
WGKWVAEIRE PINGKLVGEK ANRLWLGTFS TALEAALAYD EAAKAMYGPS ARLNFPDPSV  120
EPIHSNGSSS SSGCDKKSPS GSSENDGDVE RAESERNLHQ PNEEKPRFSE VGVFEVTQEK  180
LVLCGGCVAD DSIEELKEMT SGFEQCQTSE ECKAITSKNI KSEIPEESEG IERELERVLK  240
NSGIGEEDNL LHNEPLDIAM NTGANYCSSS DAAEHDIVEK SEETRGESVE TLKQCELSCS  300
NHCLGCMHNM LPDSNSKPHS EHFNNDRSEA SIARKHTEEV ISEILGLCHS KCLKINHDQS  360
PHEHYRTEHF DDTRTKLKCL ECKLRAHSIH YKTQAPIVGD SNYPSMQGIH MFGSGTVGPI  420
ESMSQIDAMN NINTSRNSLP GFSSGHSRKL CDLSQQLHKL GGCLPEHWNN MQFADLEVGY  480
DYSFLNPDYD FGLLEEKKLL DVCFPQIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1653116360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g08310.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417707.10.0PREDICTED: uncharacterized protein LOC108328359
TrEMBLA0A0S3RTW40.0A0A0S3RTW4_PHAAN; Uncharacterized protein
STRINGXP_007140202.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.11e-32ERF family protein