PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g05780.7

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TALE

Protein Properties

Length: 700aa MW: 75762.4 Da PI: 7.1111

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g05780.7	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.2	1.6e-09	402	439	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Vang04g05780.7 402 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 439 554459******************************88 PP
2	BELL	94.5	9.5e-31	252	337	1	72
BELL 1 erqelqkkkakLlsllee..............VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+ +l+e V++rY+qy++q+++v+ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdaia+q+ Vang04g05780.7 252 ERQEIQMKKAKLIAMLDEkdyeglivvdcmvvVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQV 337 79*************88888888888888799***********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.9E-54	179	335	IPR006563	POX domain
Pfam	PF07526	5.5E-45	186	334	IPR006563	POX domain
PROSITE profile	PS50071	12.195	380	443	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	383	447	IPR001356	Homeobox domain
CDD	cd00086	1.27E-12	383	444	No hit	No description
SuperFamily	SSF46689	7.27E-17	384	450	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	386	449	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-18	400	439	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
LLYQKPMATY FHHGNSEIQS GAADGLQTLV LMNPGYIHYS DAPSQPPPSH AAGNLVFLNP 60 AAVAGANSNG SFNPHAPPSH TQQFVGIPLP ASQDLNHHSM HGHHDVSALH GFLPRMQYNH 120 WNALDPASAA RDTPRAQQGL SLGLGSFREG QAPGMSGDDL RVSGGSPSSA SGVTNNGASG 180 IQSVFLSSKY LKAAHELLEE VVNVNNGIGT ELGKKSGGQT KVIGESSAAG SGDGSVGGEG 240 NGKRNSELST AERQEIQMKK AKLIAMLDEK DYEGLIVVDC MVVVEQRYRQ YHQQMEIVVS 300 SFEQAAGIGS ARTYTALALQ TISKQFRCLK DAIAGQVRAA NKSLGEEDCF GGKIEGSRLK 360 YVDHHLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK 420 QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEMKDHEQNG SEDKSSKSNG DSSTKMAAPA 480 EKGPSNETEA KSFSSKQEVS KSQNTAMVSV SRPSTSPLGG SVRNQSGFSF MGSSELEGIT 540 QGSPKKARNH EMMHSPNSVP SMNIDVKPNE ANNEQLSMKF GDERQGRNES SFMGNQTNFI 600 GGFGQYPIGD IGRFDAEQFA PRFSGNGVSL TLGLDSLPGT HQTFLPNQNI QLGRSLDIGE 660 PNEFGSINNS SPHSSAAYES ISMQNPKRFA AQLLPDFVT*

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

LLYQKPMATY FHHGNSEIQS GAADGLQTLV LMNPGYIHYS DAPSQPPPSH AAGNLVFLNP  60
AAVAGANSNG SFNPHAPPSH TQQFVGIPLP ASQDLNHHSM HGHHDVSALH GFLPRMQYNH  120
WNALDPASAA RDTPRAQQGL SLGLGSFREG QAPGMSGDDL RVSGGSPSSA SGVTNNGASG  180
IQSVFLSSKY LKAAHELLEE VVNVNNGIGT ELGKKSGGQT KVIGESSAAG SGDGSVGGEG  240
NGKRNSELST AERQEIQMKK AKLIAMLDEK DYEGLIVVDC MVVVEQRYRQ YHQQMEIVVS  300
SFEQAAGIGS ARTYTALALQ TISKQFRCLK DAIAGQVRAA NKSLGEEDCF GGKIEGSRLK  360
YVDHHLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK  420
QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEMKDHEQNG SEDKSSKSNG DSSTKMAAPA  480
EKGPSNETEA KSFSSKQEVS KSQNTAMVSV SRPSTSPLGG SVRNQSGFSF MGSSELEGIT  540
QGSPKKARNH EMMHSPNSVP SMNIDVKPNE ANNEQLSMKF GDERQGRNES SFMGNQTNFI  600
GGFGQYPIGD IGRFDAEQFA PRFSGNGVSL TLGLDSLPGT HQTFLPNQNI QLGRSLDIGE  660
PNEFGSINNS SPHSSAAYES ISMQNPKRFA AQLLPDFVT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-16	389	446	1	58	Homeobox protein Meis1
4xrs_B	2e-16	389	446	1	58	Homeobox protein Meis1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g05780.7

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418664.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_017418665.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_017418667.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-170	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A0S3RZD6	0.0	A0A0S3RZD6_PHAAN; Uncharacterized protein
STRING	XP_007162972.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-159	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]