PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g05220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 26769.9 Da PI: 7.7247 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.4 | 1.4e-19 | 82 | 136 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Vang04g05220.1 82 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTK 136 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.5e-41 | 82 | 172 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+ +LEe+F+e+++L+p+rK++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr +lk Vang04g05220.1 82 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELR-ALK 172 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 7.1E-9 | 11 | 49 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 6.8E-20 | 62 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.41E-20 | 64 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-17 | 80 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.94E-17 | 82 | 139 | No hit | No description |
Pfam | PF00046 | 5.5E-17 | 82 | 136 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.6E-26 | 138 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 9.3E-12 | 138 | 172 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSVDHPDRSS DVIRGVDVKS TVECEEDNGI SSPNSAVSSV SGGKRSERDD DNAALVASGE 60 RTSCSRGSDD DDGGGGDCEG GRKKLRLTKE QSMVLEETFK EHNTLNPKRK QALAEELNLK 120 PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CENLTEDNRR LQKEVQELRA LKSSPQMYMH 180 MNPPTTLTMC PSCERGHSSS TSSPAAVHPV VPPTSRKLFG ANIRRPVAVN TWPFDGSIPR 240 P* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g05220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417381.1 | 1e-174 | PREDICTED: homeobox-leucine zipper protein HAT3-like | ||||
Swissprot | P46602 | 5e-83 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A0S3RS74 | 1e-174 | A0A0S3RS74_PHAAN; Uncharacterized protein | ||||
STRING | XP_007139620.1 | 1e-127 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 2e-69 | homeobox-leucine zipper protein 3 |
Publications ? help Back to Top | |||
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