PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g05120.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 412aa    MW: 46102.9 Da    PI: 9.5036
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g05120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-2076126255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +++GVr+++ +g+++AeIrdp++ng  +r++lg+f+t+e+Aa a+++a+ k++g
  Vang04g05120.1  76 HFRGVRRRP-WGKFAAEIRDPKKNG--TRVWLGTFDTEEKAALAYDKAAFKMRG 126
                     79*******.***********9998..*************************98 PP
2AP261.22.4e-19262312255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeAa a+++a+ k++g
  Vang04g05120.1 262 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYVTEEEAALAYDKAAFKMRG 312
                     7********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.54E-3075136No hitNo description
SMARTSM003803.9E-4076140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3276135IPR001471AP2/ERF domain
PROSITE profilePS5103224.01276134IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2376135IPR016177DNA-binding domain
PfamPF008472.2E-1476126IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-22262321IPR016177DNA-binding domain
SMARTSM003806.6E-38262326IPR001471AP2/ERF domain
PROSITE profilePS5103224.566262320IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31262321IPR001471AP2/ERF domain
PfamPF008476.3E-14262312IPR001471AP2/ERF domain
PRINTSPR003675.0E-13263274IPR001471AP2/ERF domain
CDDcd000182.06E-23270322No hitNo description
PRINTSPR003675.0E-13302322IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MTSATADSDF EFLESVRQYL LGHDSINLMP ATHQVASHDP LSNPKRDGDL ENIVFRSEDA  60
TAVVARHVHA PQAWKHFRGV RRRPWGKFAA EIRDPKKNGT RVWLGTFDTE EKAALAYDKA  120
AFKMRGQKAK LNFPHLIDSD NFETLSEPVM ETTCKRKLSQ SFEPSSPSSS CSEDSSESQG  180
TKRRKNLTHL LNKLAKNRSQ AKLAYSAFLE QIQHYLLHND STIVTPSQAF PCPSHGTCSD  240
ASVDFSHPTE ARDENAPPKW RRYRGVRRRP WGKFAAEIRD PKKNGARVWL GTYVTEEEAA  300
LAYDKAAFKM RGRKAKLNFP HLIDSDVSSE PPSAAALKRS LPESCPPPPP SSSSMDDSCC  360
KSQGSKRRKN LLNNLAKNGR SQAKVVEMAL EANVVQQWLN DFSDCTLIWC S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2975325268ATERF1
3gcc_A6e-2975325268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g05120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418116.11e-130PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ404763e-33ERF1_TOBAC; Ethylene-responsive transcription factor 1
SwissprotQ404793e-33ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A0L9U3E31e-129A0A0L9U3E3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RSA31e-129A0A0S3RSA3_PHAAN; Uncharacterized protein
STRINGXP_007139636.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-34ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]