PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g03920.1 | ||||||||
Common Name | LR48_Vigan03g043900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 184aa MW: 21053.9 Da PI: 9.61 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 9.9e-33 | 104 | 162 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Vang04g03920.1 104 LDDGYRWRKYGQKSVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 162 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-33 | 91 | 162 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-28 | 97 | 163 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.839 | 99 | 164 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-37 | 104 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-26 | 105 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
LMESHDLPPR NNPFLFNPLE PQEQGLCDFD SWGNLFSAQN SLLLLNGDAK ETIQRASSSS 60 LMAQNKVVCE EEKGSKEKRK GVRVKKTTRV PRFAFQTRSA DDVLDDGYRW RKYGQKSVKN 120 STYPRSYYRC THHTCNVKKQ VQRLSKDTSI VVTTYEGIHN HPCEKLMETL TPLLKQIQFL 180 ASL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-25 | 92 | 161 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g03920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017418158.1 | 1e-136 | PREDICTED: probable WRKY transcription factor 43 | ||||
Swissprot | Q9FFS3 | 3e-57 | WRK24_ARATH; Probable WRKY transcription factor 24 | ||||
TrEMBL | A0A0L9U2K9 | 1e-135 | A0A0L9U2K9_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA18G47350.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 9e-58 | WRKY DNA-binding protein 24 |
Publications ? help Back to Top | |||
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