PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g03510.1
Common NameLR48_Vigan03g024800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 317aa    MW: 35167.3 Da    PI: 7.9825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g03510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W+t++ + g+ R+ k+c++rw +yl
   Vang04g03510.1 14 KGPWTPEEDIILVSYIQEHGPGNWRTVPTKTGLSRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding491.4e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++  +lG++ W++Ia++++  Rt++++k++w+++l
   Vang04g03510.1  67 RGNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-25564IPR009057Homeodomain-like
PROSITE profilePS5129426.138965IPR017930Myb domain
SuperFamilySSF466892.23E-3111108IPR009057Homeodomain-like
SMARTSM007175.3E-151363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
CDDcd001676.33E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129420.34566116IPR017930Myb domain
SMARTSM007174.0E-1566114IPR001005SANT/Myb domain
PfamPF002499.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.66E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRTV PTKTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKMIIH LQDLLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLKKLQ  120
TGSEGSLGDS FSGSRQIPRG QWERRLQTDI QMAKRALSEA LSPEKPSCLS GSNSNPSDSS  180
SSFSSTKPPQ SLCYASSAEN IARMLKGWMK NPPKSSRTNS SVTQNSFNNL VAAGADTASS  240
DAKGPNSVEL SESFESLFEF HQSLESSNSD ELSQSFSPEE NKPDIGEIMP FSLLEKWLLD  300
EAACQEKVGC GDAKFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271411627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g03510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417071.10.0PREDICTED: myb-related protein 306-like
SwissprotP813921e-110MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0L9U2F10.0A0A0L9U2F1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RSF90.0A0A0S3RSF9_PHAAN; Uncharacterized protein
STRINGXP_007139579.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-100myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]