PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0497s00080.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 335aa    MW: 38616.3 Da    PI: 4.819
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0497s00080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.4e-1981134356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t+eq++ Le+ Fe+++++  e++ +LAk+lg++ rqV +WFqNrRa+ k
  Vang0497s00080.1  81 KKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFK 134
                       56689***********************************************98 PP
2HD-ZIP_I/II128.13.8e-4181171292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       kkrrl++eqv++LE++Fe+e+kLeperKv+la+eLg+qprqva+WFqnrRAR+ktkqlEkdy +Lk+++d lk++ ++L +e+++L+ee+ 
  Vang0497s00080.1  81 KKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKARFDILKRDYDNLVQENAKLKEEVY 171
                       9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.63E-1969138IPR009057Homeodomain-like
PROSITE profilePS5007117.16776136IPR001356Homeobox domain
SMARTSM003892.1E-1778140IPR001356Homeobox domain
CDDcd000867.03E-1679137No hitNo description
PfamPF000462.9E-1681134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-2083143IPR009057Homeodomain-like
PRINTSPR000311.1E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5116132IPR000047Helix-turn-helix motif
PfamPF021832.0E-14136175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAGEKLNGGS SMTLLLQKER LPCSPEHIQT FWVQNSQPSF QGSKSLVNVV NVRDRPFFRG  60
VEREENDDDE DFEVFPHQPG KKRRLTSEQV QFLESNFEME NKLEPERKVQ LAKELGMQPR  120
QVAIWFQNRR ARFKTKQLEK DYGMLKARFD ILKRDYDNLV QENAKLKEEV YSLKKVIPRE  180
KEKQNLDDTS CDAVNSGHKE QKDLIINGGS ENESKVALPV MVISKQKDAN SAKSDVLDSE  240
SPHFTDGNQS SIFEPADSSH ALEPDHSDFS QDEEDILSQN MPLLPKFEVE YVCYDEPPEN  300
PFTYHQFSTI DDLPLLLLIN MKFFDPISLL QRRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARFKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0497s00080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411881.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1S3UPQ30.0A0A1S3UPQ3_VIGRR; homeobox-leucine zipper protein HAT5
STRINGXP_007153855.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-42homeobox 1