PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0476s00010.1
Common NameLR48_Vigan09g050700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 306aa    MW: 35433.3 Da    PI: 8.7766
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0476s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.6e-50191462128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                        pGfrFhPtdeelv +yL++kve+k+l++ e ik+vdiyk++PwdLpk  + ++kewyfF+ r +ky+++ r+nr+t+sg+Wkatg dk++++
  Vang0476s00010.1  19 LPGFRFHPTDEELVGFYLQRKVEKKPLKI-ELIKQVDIYKYDPWDLPKVNSFGDKEWYFFCIRGRKYRNSVRPNRVTRSGFWKATGIDKSIYC 110
                       69***************************.89***************6666699**************************************9 PP

               NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Vang0476s00010.1 111 VkePHDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 146
                       7434445***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5414176IPR003441NAC domain
PROSITE profilePS5100552.90518177IPR003441NAC domain
PfamPF023652.3E-2520146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MNAKVQDSDD TKKGEEVVLP GFRFHPTDEE LVGFYLQRKV EKKPLKIELI KQVDIYKYDP  60
WDLPKVNSFG DKEWYFFCIR GRKYRNSVRP NRVTRSGFWK ATGIDKSIYC VKEPHDCIGL  120
KKSLVYYRGS AGKGTKTDWM MHEFRLPPNA KSSANIANTT NNLHEAEVWT LCRIFKRIPS  180
FKKYSPNLKD TTALTKSNTV NSNTSTLDSE NCKPYLICRD PDMMQQLKPV FGQVDEKKHL  240
FLGQFGQLPH LQPPSTPYPT FWNHNVEDYA FANENWDDLR SVVQFAIDPS SVFDCTETHF  300
PPYFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-472018319171NO APICAL MERISTEM PROTEIN
1ut4_B9e-472018319171NO APICAL MERISTEM PROTEIN
1ut7_A9e-472018319171NO APICAL MERISTEM PROTEIN
1ut7_B9e-472018319171NO APICAL MERISTEM PROTEIN
3swm_A8e-472018322174NAC domain-containing protein 19
3swm_B8e-472018322174NAC domain-containing protein 19
3swm_C8e-472018322174NAC domain-containing protein 19
3swm_D8e-472018322174NAC domain-containing protein 19
3swp_A8e-472018322174NAC domain-containing protein 19
3swp_B8e-472018322174NAC domain-containing protein 19
3swp_C8e-472018322174NAC domain-containing protein 19
3swp_D8e-472018322174NAC domain-containing protein 19
4dul_A9e-472018319171NAC domain-containing protein 19
4dul_B9e-472018319171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0476s00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435868.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK555e-92NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0L9VA180.0A0A0L9VA18_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7Q40.0A0A0S3S7Q4_PHAAN; Uncharacterized protein
STRINGXP_007146230.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-92NAC domain containing protein 42
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  3. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  4. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  5. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  6. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]