PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g15430.7
Common NameLR48_Vigan09g042800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 298aa    MW: 33053.6 Da    PI: 6.2665
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g15430.7genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.6e-14139184454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av+YI++L
  Vang03g15430.7 139 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 184
                     799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-1921121IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.77E-14133185No hitNo description
PROSITE profilePS5088817.358135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-18137206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-17139196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11139184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
LEYGDGLFMG GKGREGTEVR MSEEQTRNNV NDIEWFYRVS QTRSYAAGDG VVGCAFGSGV  60
DVWLSGVKQF EVNECDERVG EARRHGIQTL VCVSVARGIL ELGSDEVLKL DYGVLQMVKS  120
VLEERGRRAG RVREALPVNH VEAERQRREK LNQRFYALRS AVPNVSKMDK ASLLSDAVDY  180
INELKVKIGS LQAAFQAKQE APAEQVQPQS IPAPPSATTD MRVEVQILGS EAMIRVQSLN  240
VNHPSARLMD ALRDVNLQVL HATISNIKEM MLQDVVVRVP HDLTTQEALQ TAIMHRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-24137188657Transcription factor MYC2
5gnj_B3e-24137188657Transcription factor MYC2
5gnj_E3e-24137188657Transcription factor MYC2
5gnj_F3e-24137188657Transcription factor MYC2
5gnj_G3e-24137188657Transcription factor MYC2
5gnj_I3e-24137188657Transcription factor MYC2
5gnj_M3e-24137188657Transcription factor MYC2
5gnj_N3e-24137188657Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g15430.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435754.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ336P51e-43MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0L9VAT30.0A0A0L9VAT3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7S30.0A0A0S3S7S3_PHAAN; Uncharacterized protein
STRINGGLYMA02G09670.11e-132(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-42bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]