PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g15430.6
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 306aa    MW: 34167.7 Da    PI: 6.6365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g15430.6genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-14147192454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av+YI++L
  Vang03g15430.6 147 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 192
                     799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-265136IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.71E-14141193No hitNo description
PROSITE profilePS5088817.358143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-18145214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-17147204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-11147192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
LQNRHERWVY AIFWQATKDS DSRLTLEYGD GLFMGGKGRE GTEVRMSEEQ TRNNVNDIEW  60
FYRVSQTRSY AAGDGVVGCA FGSGVDVWLS GVKQFEVNEC DERVGEARRH GIQTLVCVSV  120
ARGILELGSD EVLGRRAGRV REALPVNHVE AERQRREKLN QRFYALRSAV PNVSKMDKAS  180
LLSDAVDYIN ELKVKIGSLQ AAFQAKQEAP AEQVQPQSIP APPSATTDMR VEVQILGSEA  240
MIRVQSLNVN HPSARLMDAL RDVNLQVLHA TISNIKEMML QDVVVRVPHD LTTQEALQTA  300
IMHRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-24145196657Transcription factor MYC2
5gnj_B4e-24145196657Transcription factor MYC2
5gnj_E4e-24145196657Transcription factor MYC2
5gnj_F4e-24145196657Transcription factor MYC2
5gnj_G4e-24145196657Transcription factor MYC2
5gnj_I4e-24145196657Transcription factor MYC2
5gnj_M4e-24145196657Transcription factor MYC2
5gnj_N4e-24145196657Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g15430.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520013.21e-141transcription factor MYC2-like
TrEMBLA0A151R1Y81e-120A0A151R1Y8_CAJCA; Transcription factor bHLH14
STRINGGLYMA02G09670.11e-133(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.13e-43bHLH family protein