PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g15430.5
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 316aa    MW: 35268.9 Da    PI: 6.4104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g15430.5genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14157202454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av+YI++L
  Vang03g15430.5 157 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 202
                     799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-265138IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.38E-14151203No hitNo description
PROSITE profilePS5088817.358153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-18155224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-17157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11157202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
LQNRHERWVY AIFWQATKDS DSRLTLEYGD GLFMGGKGRE GTEVRMSEEQ TRNNVNDIEW  60
FYRVSQTRSY AAGDGVVGCA FGSGVDVWLS GVKQFEVNEC DERVGEARRH GIQTLVCVSV  120
ARGILELGSD EVLEGNNNNV PMMGRRAGRV REALPVNHVE AERQRREKLN QRFYALRSAV  180
PNVSKMDKAS LLSDAVDYIN ELKVKIGSLQ AAFQAKQEAP AEQVQPQSIP APPSATTDMR  240
VEVQILGSEA MIRVQSLNVN HPSARLMDAL RDVNLQVLHA TISNIKEMML QDVVVRVPHD  300
LTTQEALQTA IMHRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-24155206657Transcription factor MYC2
5gnj_B5e-24155206657Transcription factor MYC2
5gnj_E5e-24155206657Transcription factor MYC2
5gnj_F5e-24155206657Transcription factor MYC2
5gnj_G5e-24155206657Transcription factor MYC2
5gnj_I5e-24155206657Transcription factor MYC2
5gnj_M5e-24155206657Transcription factor MYC2
5gnj_N5e-24155206657Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g15430.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027931558.10.0transcription factor MYC2-like
TrEMBLA0A4D6KXU70.0A0A4D6KXU7_VIGUN; Transcription factor MYC2
STRINGGLYMA02G09670.11e-140(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.15e-48bHLH family protein