PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g15430.4
Common NameLR48_Vigan09g042800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 320aa    MW: 35515.9 Da    PI: 5.0547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g15430.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14161206454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av+YI++L
  Vang03g15430.4 161 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 206
                     799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-194101IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.72E-14155207No hitNo description
PROSITE profilePS5088817.358157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-18159228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11161206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-17161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSEEQTRNNV NDIEWFYRVS QTRSYAAGDG VVGCAFGSGV DVWLSGVKQF EVNECDERVG  60
EARRHGIQTL VCVSVARGIL ELGSDEVLKL DYGVLQMVKS VLEERESGSE NPEEERERRR  120
ELEGSSTDSS GPSDHDAEGN NNNVPMMGRR AGRVREALPV NHVEAERQRR EKLNQRFYAL  180
RSAVPNVSKM DKASLLSDAV DYINELKVKI GSLQAAFQAK QEAPAEQVQP QSIPAPPSAT  240
TDMRVEVQIL GSEAMIRVQS LNVNHPSARL MDALRDVNLQ VLHATISNIK EMMLQDVVVR  300
VPHDLTTQEA LQTAIMHRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-24159210657Transcription factor MYC2
5gnj_B5e-24159210657Transcription factor MYC2
5gnj_E5e-24159210657Transcription factor MYC2
5gnj_F5e-24159210657Transcription factor MYC2
5gnj_G5e-24159210657Transcription factor MYC2
5gnj_I5e-24159210657Transcription factor MYC2
5gnj_M5e-24159210657Transcription factor MYC2
5gnj_N5e-24159210657Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g15430.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435754.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0L9VAT30.0A0A0L9VAT3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S7S30.0A0A0S3S7S3_PHAAN; Uncharacterized protein
STRINGXP_007151965.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-45bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]