PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g15430.2 | ||||||||
Common Name | LR48_Vigan09g042800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36646.5 Da PI: 6.1886 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.2e-14 | 169 | 214 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+ +P+ K++Ka+ L Av+YI++L Vang03g15430.2 169 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 214 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.9E-28 | 5 | 146 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 4.26E-14 | 163 | 215 | No hit | No description |
PROSITE profile | PS50888 | 17.358 | 165 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.94E-18 | 167 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-17 | 169 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 169 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-15 | 171 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
LQNRHERWVY AIFWQATKDS DSRLTLEYGD GLFMGGKGRE GTEVRMSEEQ TRNNVNDIEW 60 FYRVSQTRSY AAGDGVVGCA FGSGVDVWLS GVKQFEVNEC DERVGEARRH GIQTLVCVSV 120 ARGILELGSD EVLKLDYGVL QMVKSVLEER ESGSEGRRAG RVREALPVNH VEAERQRREK 180 LNQRFYALRS AVPNVSKMDK ASLLSDAVDY INELKVKIGS LQAAFQAKQE APAEQVQPQS 240 IPAPPSATTD MRVEVQILGS EAMIRVQSLN VNHPSARLMD ALRDVNLQVL HATISNIKEM 300 MLQDVVVRVP HDLTTQEALQ TAIMHRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-24 | 167 | 218 | 6 | 57 | Transcription factor MYC2 |
5gnj_B | 5e-24 | 167 | 218 | 6 | 57 | Transcription factor MYC2 |
5gnj_E | 5e-24 | 167 | 218 | 6 | 57 | Transcription factor MYC2 |
5gnj_F | 5e-24 | 167 | 218 | 6 | 57 | Transcription factor MYC2 |
5gnj_G | 5e-24 | 167 | 218 | 6 | 57 | Transcription factor MYC2 |
5gnj_I | 5e-24 | 167 | 218 | 6 | 57 | Transcription factor MYC2 |
5gnj_M | 5e-24 | 167 | 218 | 6 | 57 | Transcription factor MYC2 |
5gnj_N | 5e-24 | 167 | 218 | 6 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g15430.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435754.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | A0A0L9VAT3 | 0.0 | A0A0L9VAT3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S7S3 | 0.0 | A0A0S3S7S3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151965.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 1e-47 | bHLH family protein |
Publications ? help Back to Top | |||
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