PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g15430.1 | ||||||||
Common Name | LR48_Vigan09g042800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 37684.7 Da PI: 6.4143 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.4e-14 | 178 | 223 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+ +P+ K++Ka+ L Av+YI++L Vang03g15430.1 178 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 223 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.0E-28 | 5 | 146 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 3.54E-14 | 172 | 224 | No hit | No description |
PROSITE profile | PS50888 | 17.358 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.2E-18 | 176 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 178 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-17 | 178 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-15 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
LQNRHERWVY AIFWQATKDS DSRLTLEYGD GLFMGGKGRE GTEVRMSEEQ TRNNVNDIEW 60 FYRVSQTRSY AAGDGVVGCA FGSGVDVWLS GVKQFEVNEC DERVGEARRH GIQTLVCVSV 120 ARGILELGSD EVLKLDYGVL QMVKSVLEER ESGSENPVSK QWVVGRRAGR VREALPVNHV 180 EAERQRREKL NQRFYALRSA VPNVSKMDKA SLLSDAVDYI NELKVKIGSL QAAFQAKQEA 240 PAEQVQPQSI PAPPSATTDM RVEVQILGSE AMIRVQSLNV NHPSARLMDA LRDVNLQVLH 300 ATISNIKEMM LQDVVVRVPH DLTTQEALQT AIMHRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-24 | 176 | 227 | 6 | 57 | Transcription factor MYC2 |
5gnj_B | 6e-24 | 176 | 227 | 6 | 57 | Transcription factor MYC2 |
5gnj_E | 6e-24 | 176 | 227 | 6 | 57 | Transcription factor MYC2 |
5gnj_F | 6e-24 | 176 | 227 | 6 | 57 | Transcription factor MYC2 |
5gnj_G | 6e-24 | 176 | 227 | 6 | 57 | Transcription factor MYC2 |
5gnj_I | 6e-24 | 176 | 227 | 6 | 57 | Transcription factor MYC2 |
5gnj_M | 6e-24 | 176 | 227 | 6 | 57 | Transcription factor MYC2 |
5gnj_N | 6e-24 | 176 | 227 | 6 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g15430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435754.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | A0A0L9VAT3 | 0.0 | A0A0L9VAT3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S7S3 | 0.0 | A0A0S3S7S3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007151965.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 7e-52 | bHLH family protein |
Publications ? help Back to Top | |||
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