PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g13930.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 405aa    MW: 44323.1 Da    PI: 8.2517
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g13930.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.83.1e-32245301158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrkpylheSRh+hA+rR Rg+gGrF
  Vang03g13930.1 245 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRKPYLHESRHQHAMRRVRGTGGRF 301
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-35243304IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.422244304IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.0E-28246301IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.7E-24247269IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860249269IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.7E-24278301IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
VEVVVPTQRP RVSRTCAAQV RVTWATFFFC WVPLKGPDNL TRSPHPQSQP TIPGHASPLS  60
HTTHPLLPPA LPVPLLHVSL VTPQGSVDMQ SKSETANRLR SDPHSFQPGS VYSEPWWRGI  120
GYNPLAQTMA GANASNSSSL ECPNGDSESN EEGQSLSNSG MNEEDDDATK ESQRTAPNEP  180
GMCYKSLSRS VLWGHDGSLW SPAVGHSITV TDLQFPQICV IRNMGYPPFI GMPHARMPLP  240
LEMAQEPVYV NAKQYQGILR RRQARAKAEL ERKLIKSRKP YLHESRHQHA MRRVRGTGGR  300
FAKKSDAEGS NNSGKEKDNG ADSVLSSQSI SSSGSEPLHS DSAETWNSPN MQQDARAAKV  360
QNRFEAPSFQ NGSGSYNNHH GLQSSVYHSS SGERVEEGDR SGQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18245301258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g13930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436676.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
RefseqXP_017436677.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A0L9VBV60.0A0A0L9VBV6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S6G70.0A0A0S3S6G7_PHAAN; Uncharacterized protein
STRINGXP_007146701.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.33e-59nuclear factor Y, subunit A1