PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g12440.2 | ||||||||
Common Name | LR48_Vigan09g135900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 165aa MW: 19123.9 Da PI: 6.9334 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 26.2 | 1e-08 | 1 | 24 | 20 | 43 |
HHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 20 ilKKAeELSvLCdaevaviifsst 43 ++KK +E+S+LC++e++ ii+s++ Vang03g12440.2 1 LIKKMNEISTLCGIEACAIIYSPN 24 78********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.14E-12 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.9E-7 | 1 | 25 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.00E-19 | 1 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
LIKKMNEIST LCGIEACAII YSPNDPQPEV WPSEPEVQRV LSKFMEMSEQ KQCRKMLNQE 60 SLLKQIIIKG QQQLTRQRND NRKKEMTHLM FQYLNVGRVY DNPSLIDLND LSWLIDQNLN 120 EIKKKMTMIQ IQEGAPVTEN GGERGHMHHA QGPENRTDTI QNQY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g12440.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434674.1 | 1e-117 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0L9VCA4 | 1e-116 | A0A0L9VCA4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007146871.1 | 1e-100 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-31 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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