PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g10760.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 309aa    MW: 35337.1 Da    PI: 10.1764
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g10760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.82.6e-2028118199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+    +  s +l +p++f++ ++g++++  +++l   +g+ W+vk+  +k  gr v+++GW+eF k+++L++ Df+vF++dg+++f  +vk
  Vang03g10760.1  28 FFKVF--LTNRGSTQLQIPRSFTKFFSGIPPC--KVILVEHDGKHWDVKV--EKIEGRLVFKSGWQEFSKEKNLEDCDFLVFEYDGKTTF--NVK 114
                     78888..445555669*******999999988..7***************..********************************997777..9*9 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f k
  Vang03g10760.1 115 IFGK 118
                     9987 PP
2B337.93.1e-122163031298
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfr 98 
                     k++r+ +p+k ++ +++k    + +tl+de+g+sW v ++ + + +r +l++GW  F +++++++g  + F+  +d+    +el+v+v++
  Vang03g10760.1 216 KLKRVEFPRKLLKMNNIK--LLRSITLRDENGKSWLVMINSSSNYDRSFLGSGWMAFKESKNIQVGSRCDFQflVDKAnVARELLVRVLS 303
                     45678899****999877..5568***************8877777799**********************9643444577778887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.9326119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-2227121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-2328121IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-1728116No hitNo description
SMARTSM010192.6E-1628119IPR003340B3 DNA binding domain
PfamPF023628.9E-1828118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.9E-11204290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-11205287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.743205305IPR003340B3 DNA binding domain
SMARTSM010194.2E-4207305IPR003340B3 DNA binding domain
CDDcd100171.65E-9215279No hitNo description
PfamPF023621.3E-9216303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
LPFPCRIVFV RMESAGLSCG GDKISCEFFK VFLTNRGSTQ LQIPRSFTKF FSGIPPCKVI  60
LVEHDGKHWD VKVEKIEGRL VFKSGWQEFS KEKNLEDCDF LVFEYDGKTT FNVKIFGKTG  120
CRKVAAPPKV VPIVDLEEDS DEHSHEIQNN GVRKRPLPSP KTNVKSEGAC PFKEAQRKSK  180
RIKEGKDKMN DEKPALTKHV PLENAHFQIC FDTPYKLKRV EFPRKLLKMN NIKLLRSITL  240
RDENGKSWLV MINSSSNYDR SFLGSGWMAF KESKNIQVGS RCDFQFLVDK ANVARELLVR  300
VLSKIKKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-15211214104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g10760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017440000.10.0PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLA0A0S3S5760.0A0A0S3S576_PHAAN; Uncharacterized protein
STRINGXP_007147158.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-22B3 family protein