PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g09360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 612aa MW: 66905.2 Da PI: 6.3162 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.4e-13 | 438 | 484 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ + K++Ka+ L A+ YI++Lq Vang03g09360.1 438 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 484 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.8E-53 | 52 | 237 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.301 | 434 | 483 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-18 | 437 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.15E-15 | 437 | 488 | No hit | No description |
Pfam | PF00010 | 9.0E-11 | 438 | 484 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-18 | 438 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-17 | 440 | 489 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MKVDAGSGRV AWNEEEKAVV GAVLGGRALE FLTTNSVSNE SVLMAVGSDE GLQNKLSDLV 60 ERPNDSNFSW NYAIFWQLSQ SKSGDWVLGW GDGCCREPNE EEEGAVRGKL RLLRVDEEME 120 QRMRKGVLQK LHTTFGGSDE DNYAFGLDHV TDTEMFFLAS MYFSFPRGHG GPGKCFVSGK 180 HLWLKSVSDY CVRSSLVKSA GIQTIVMIPT DLGVVELGSV RVLAESFELV QAVKSVFSTQ 240 CSPYPGVNVS ASGNAVYTGL AIGDGSKVDG GVPIPKLFAN ATGNRTHFRE KLAVRKMEDN 300 RPWAGHALPN GNNLNNNPNA MNGLHVPGWA VNSGVRQAGP VEIFASRAST SSVVAELPNG 360 ARQDFRLGNG YQPQRQVQMQ IDFTGATSRP SHVRPVVGDS ELSDVEASCK EEQASVLDER 420 KPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRSV VPNISKMDKA SLLGDAIAYI 480 NELQAKVKIM EAERERFGST SKDGSVLEAN SRSENKNQEK EAPDVDIQAA QDEVTVKVSC 540 PFDTHPVSKV IQTLREAQIS VVESKLAAVN DTVFHTFVIK SQGSEQLTKD KLIAVFSPPE 600 SNPLQPLLSV E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-29 | 432 | 494 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 2e-29 | 432 | 494 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 2e-29 | 432 | 494 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 2e-29 | 432 | 494 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 2e-29 | 432 | 494 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 2e-29 | 432 | 494 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 2e-29 | 432 | 494 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 2e-29 | 432 | 494 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 419 | 427 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g09360.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017437364.1 | 0.0 | PREDICTED: transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A0S3S4S0 | 0.0 | A0A0S3S4S0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147321.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5448 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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