PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g09140.1 | ||||||||
Common Name | LR48_Vigan09g168000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRAS | ||||||||
Protein Properties | Length: 586aa MW: 66088.6 Da PI: 5.3015 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 316.1 | 7.5e-97 | 212 | 583 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn.sseelaalklfsevsPilkf 93 e Ll+cAe v ++++e+a++lL++ + l+s++g+p++R+++yf+eAL +r+ ++ +k l + ++ ++++ +e a ++f+e+ P+ ++ Vang03g09140.1 212 SESLLACAEKVGHQQFERARKLLSHCQSLSSKTGSPVKRIVHYFAEALLHRIDTeTGRASSKDLhKGQSFDPEEaAKELNPAITAFYEALPFCQI 306 578*************************************************995556666667444555555535555667788********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 s +ta qaI e +++++++H+iD++i +G+QW+ L+qaL sR + p l+iT+++s + ++ +e tg+rL++fA+ l++pf+fn++++ +l Vang03g09140.1 307 SVFTAVQAIIEDIAEAKKIHVIDLEIRKGGQWAILMQALESRHQCPVeLLKITAIESGT--TRHIVEDTGKRLKDFAQGLNIPFSFNIVMVPDLL 399 *******************************************6665499*******44..9999***********************9999*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 l+ + ++++pgEa+aV ++++l ++s +le +++++++l+P+v+vv+e ea+hns+sF++rf+eal ++sa+fd+lea + ++++r Vang03g09140.1 400 HLKEDLFEIDPGEAIAVYSQFALRAKIQQSDQLEI----IMRVIRTLNPNVMVVSEIEANHNSTSFVNRFIEALFFFSAFFDCLEACMKGNEKTR 490 ***************************99999999....******************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +E +++ i+n+va+egaer+ r+ + Wr+ ++++G+ + +ls+ qa+l+ ++++ + + +++ ++l+ gWk+ p+ svS+W+ Vang03g09140.1 491 MIIESLYFSHGIKNIVATEGAERKTRNVKIDVWRAFFSRFGMVEKELSTLSLYQADLVSKRFPcGSSCTFDKNGQCLIVGWKGTPINSVSVWK 583 ***************************************************************999999***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.594 | 185 | 562 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-94 | 212 | 583 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MEDLYHVCFS TVDENSSSSN DIFWGSEEHN EIKKLHFSGA ENHGVYGGVD SFYSNFEFST 60 DYPSGYLISS NQEKYHQQQS YHDYGDLDDN LQFDMVSPPL QFDAQYPTSG TTEDKPHSTF 120 PLASLEILKN YGKGFKRFSY EGKSLQPVVD SVATDEFGFR KLSTEDIMRI AGTRFIKSSS 180 SESEPLTFLE THPYGFSFSG FSDEEKEDVA LSESLLACAE KVGHQQFERA RKLLSHCQSL 240 SSKTGSPVKR IVHYFAEALL HRIDTETGRA SSKDLHKGQS FDPEEAAKEL NPAITAFYEA 300 LPFCQISVFT AVQAIIEDIA EAKKIHVIDL EIRKGGQWAI LMQALESRHQ CPVELLKITA 360 IESGTTRHIV EDTGKRLKDF AQGLNIPFSF NIVMVPDLLH LKEDLFEIDP GEAIAVYSQF 420 ALRAKIQQSD QLEIIMRVIR TLNPNVMVVS EIEANHNSTS FVNRFIEALF FFSAFFDCLE 480 ACMKGNEKTR MIIESLYFSH GIKNIVATEG AERKTRNVKI DVWRAFFSRF GMVEKELSTL 540 SLYQADLVSK RFPCGSSCTF DKNGQCLIVG WKGTPINSVS VWKFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-41 | 213 | 583 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g09140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435897.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A0L9VD87 | 0.0 | A0A0L9VD87_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S4N3 | 0.0 | A0A0S3S4N3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147356.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-45 | RGA-like 1 |
Publications ? help Back to Top | |||
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