PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g09030.1 | ||||||||
Common Name | LR48_Vigan09g166000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 26659.8 Da PI: 8.2941 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.4e-18 | 23 | 75 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++ q++ Le++Fe ++ + +++ e A++lgL+ rqV +WFqN+Ra++k Vang03g09030.1 23 KKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWK 75 457*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114.7 | 5.8e-37 | 22 | 113 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+ qvk+LE++Fe++++Lep +K e+areLglqprqva+WFqn+RAR+k+kql +dy++L+++y++l ++ ++L+ke +++ ++l++ Vang03g09030.1 22 NKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQLQRDYTTLRANYKTLDSRFDALNKEYQSMLTQLQD 113 69***********************************************************************************9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 6 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.38E-17 | 7 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.8E-16 | 15 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.54E-13 | 16 | 78 | No hit | No description |
PROSITE profile | PS50071 | 16.746 | 17 | 77 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-15 | 23 | 75 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.3E-5 | 48 | 57 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 57 | 73 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.0E-11 | 77 | 119 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSDISEYSHS SNAGTRKKRS INKKRFSDGQ VKSLESMFET DSRLEPAKKL EVARELGLQP 60 RQVAIWFQNK RARWKLKQLQ RDYTTLRANY KTLDSRFDAL NKEYQSMLTQ LQDLKNRLQK 120 PLEQTESCST RYKAANSMES EAGNGETVKR EQEIKRPCWT AGRSEGIVRS VISDCDSSIK 180 AKQYFGVEDE ASLLNFVENT DGSLTTPQHW GLLESDDIMG CDYQWWDFWS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g09030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435922.1 | 1e-172 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A0L9VD68 | 1e-171 | A0A0L9VD68_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3S4P9 | 1e-170 | A0A0S3S4P9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007147343.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-50 | homeobox 12 |
Publications ? help Back to Top | |||
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