PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g06110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Dof | ||||||||
Protein Properties | Length: 307aa MW: 33198.1 Da PI: 7.9204 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.7 | 2.3e-37 | 68 | 121 | 3 | 56 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrr 56 +++lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+ Vang03g06110.1 68 QQTLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCS 121 7899************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 9.0E-32 | 69 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.857 | 71 | 125 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-24 | 72 | 123 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 73 | 109 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
LFTLCFQGFL GTSKMSGNCE KMVVIPPTTN QWPQVDDRKV LMGSFGGSNN SKVMEKPDQE 60 LVQQQLQQQT LKCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT LRNVPVGGGC 120 SSDVNLPLFP RFGSRISSSG FDLQLNNALG LGFSSGVVSN EPSENNSFRN GFGSNNALLS 180 SYNSIFGSSS SSTSTAPALS SLLSSTLLQQ KFIGSGLKDG ADSNTFQHGL GLTPLEQLQM 240 PSDNSEAGMV SLKDVKVELG QNSRLEWNGA CQNQIQHVGM YDPSLYWNNS ATALGVWNDQ 300 AANIGS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g06110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148145.1 | 1e-176 | hypothetical protein PHAVU_006G184000g | ||||
TrEMBL | V7BQA0 | 1e-175 | V7BQA0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148145.1 | 1e-175 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-29 | Dof family protein |