PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g05020.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 412aa    MW: 48059.5 Da    PI: 4.7646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g05020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-0963108555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + e ErrRR+++ s++  Lr ++P       + ++Ka+i e A+ YI +Lq
  Vang03g05020.1  63 NLETERRRREKLSSRLLMLRAIVPII-----TNMNKATIIEDAITYIEKLQ 108
                     5689*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-1557131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1558124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.68158107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-960112No hitNo description
PfamPF000109.9E-762108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1064113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.49E-7249305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.59256294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MLSLHIPFPK THPAPSQMEY EDEDWLCVTM EEFSLATENG SSKQGIGRKR NYDDGTREFK  60
SKNLETERRR REKLSSRLLM LRAIVPIITN MNKATIIEDA ITYIEKLQDK VQSLSQELHQ  120
METTSEETGN TTDEIDAAQD MKDLGIQEEV RVAQIDGNKL WVKIIIEKRK GRFRKLMEAL  180
NNFSIELIDT NLTTTKGAFL ISSCIQDRDD LFSQKMEHED EDWLCYTMEE NDCSRQRMSR  240
KRNYDDNTKE FKSKNLEVER RRREKLSRRL LMLRGTIIVD AITYIEKFQD EVQSLSQQLH  300
QMEATSEETT ETKIDEIEAV EDMKNWGIQE EVTVAQIDEN KFWVKIIIEK KRGSFSKLME  360
TLNYFGIELM DTNLTTTKGA FLITSCIQGK NGERLEINQI KDLLQDIIND M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263ERRRRE
2259264RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g05020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-149AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433966.11e-146PREDICTED: transcription factor DYT1
TrEMBLA0A4D6KIW40.0A0A4D6KIW4_VIGUN; Transcription factor MYC2
STRINGXP_007148286.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.16e-30bHLH family protein