PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g05010.1

Common Name

LR48_Vigan09g253600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 455aa MW: 49149.3 Da PI: 4.9205

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g05010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	344	381	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Vang03g05010.1 344 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 381 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	332	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.59E-6	342	386	No hit	No description
SuperFamily	SSF47459	1.7E-11	342	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-8	346	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042631	Biological Process	cellular response to water deprivation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071472	Biological Process	cellular response to salt stress
GO:2000214	Biological Process	regulation of proline metabolic process
GO:2000377	Biological Process	regulation of reactive oxygen species metabolic process
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MAEEFQAAIC GESWWNINST RSVFPLISST CSVAAADAGN YSTWQSTDFV DLKGTRSCAE 60 DINNFISSDN SLSFLDVEKP QLRDSAGGTG SILTDSTLQM IGFGMSSSAS SNWNQSLLGS 120 DFHSVLQGET GMDGDLPKNF SSAGGQGSTV DAFKSMNQEF SLDQQSLNSV VTSTGSLSGG 180 FPVVSASYGY PSTLIQGLYD PEPQPQPQNS LFTNPPMSYS SSTANYGTCS NELSPTWSKI 240 SSLLKPSTPK QQLSGLHFSN DTSFWNGSAE ALHDIRAGVF ASSQAQYQTP KFEEKSNSSN 300 TRLNKLKREE SPDAISSAKK NSSEPAFKRQ RIETPSPLPT FKVRKEKLGD RITALQQLVS 360 PFGKTDTASV LHEAIEYIKF LHDQVSVLST PYIKNGAPIQ HQQDCDNLKE SEGRKEDLRS 420 RGLCLVPISS TFPVANESSV DFWTPTFGGA VIGR*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MAEEFQAAIC GESWWNINST RSVFPLISST CSVAAADAGN YSTWQSTDFV DLKGTRSCAE  60
DINNFISSDN SLSFLDVEKP QLRDSAGGTG SILTDSTLQM IGFGMSSSAS SNWNQSLLGS  120
DFHSVLQGET GMDGDLPKNF SSAGGQGSTV DAFKSMNQEF SLDQQSLNSV VTSTGSLSGG  180
FPVVSASYGY PSTLIQGLYD PEPQPQPQNS LFTNPPMSYS SSTANYGTCS NELSPTWSKI  240
SSLLKPSTPK QQLSGLHFSN DTSFWNGSAE ALHDIRAGVF ASSQAQYQTP KFEEKSNSSN  300
TRLNKLKREE SPDAISSAKK NSSEPAFKRQ RIETPSPLPT FKVRKEKLGD RITALQQLVS  360
PFGKTDTASV LHEAIEYIKF LHDQVSVLST PYIKNGAPIQ HQQDCDNLKE SEGRKEDLRS  420
RGLCLVPISS TFPVANESSV DFWTPTFGGA VIGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g05010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031120	0.0	KT031120.1 Glycine max clone HN_CCL_146 bHLH transcription factor (Glyma13g32320.2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435141.1	0.0	PREDICTED: transcription factor bHLH112 isoform X1
TrEMBL	A0A0L9VG21	0.0	A0A0L9VG21_PHAAN; Uncharacterized protein
STRING	XP_007148280.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1118	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	7e-68	bHLH family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]