PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g03760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | G2-like | ||||||||
Protein Properties | Length: 668aa MW: 73009.5 Da PI: 6.6634 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.5 | 6.1e-33 | 42 | 96 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Vang03g03760.1 42 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP | |||||||
2 | G2-like | 106.4 | 1.6e-33 | 387 | 441 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Vang03g03760.1 387 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 441 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.569 | 39 | 99 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-31 | 39 | 97 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 42 | 97 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.97E-16 | 42 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-7 | 44 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.0E-15 | 137 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
PROSITE profile | PS51294 | 14.134 | 384 | 444 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-17 | 385 | 441 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-32 | 386 | 442 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-25 | 387 | 442 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-9 | 389 | 440 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.7E-23 | 474 | 520 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MYPRLIHPHD GIVAQDDMQA AASNLSHSHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT 60 QLGGASKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDVGEGCKD GSYLLESPGT 120 ENTSPKLPTS DTNEGYEIKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAER RYMAMLERAC 180 KMLADQFIGA TVIDTDSQKF QAIGSKTPRG TLVDPLGFYS LPSAEVAGVN VPDEEIAPSL 240 PPQRADCSTE SCLTSHESSG GLTLEGSPGG GKRRMLGMDS MAAPLIWSEA KMRTQAINVA 300 QGSLPQGITS LVGWGARLFI SDILGGFNLY KETVCLSMRL EFFPGNSPEE RNREALVHGQ 360 HIDCGGSAMD PGNGGNNHSN NSNLTSKQRL RWTHELHERF VDAVAQLGGP DRATPKGVLR 420 VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS DEGKKADKKE TGDVLSNLDG SSGMQITEAL 480 KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLSEAPD TEVVAVVPGD 540 VCQEPDNKTD PSTPDPEKAA KDRVPAKSLS MESFSSHHEP LTPDSGCHIG SPADSPKGER 600 STKKQRLNMD GSYSKPDMVL PLQILESSMS QYQHPSTVFL GQEQFDPSLG MATRSGEELD 660 KVGGSNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-23 | 42 | 444 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-23 | 42 | 444 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-23 | 42 | 444 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-23 | 42 | 444 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g03760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU500763 | 0.0 | EU500763.1 Phaseolus vulgaris phosphate high response (PHR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023903823.1 | 0.0 | uncharacterized protein LOC112015623 | ||||
Swissprot | Q9SJW0 | 1e-114 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A4D6KL56 | 0.0 | A0A4D6KL56_VIGUN; Two-component response regulator ARR-B family | ||||
STRING | XP_010059710.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 1e-99 | G2-like family protein |