PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g02210.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 247aa MW: 27530.1 Da PI: 9.221 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.2 | 4.4e-32 | 68 | 179 | 7 | 112 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssgkaaksa 94 hsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ + +++ e + s + ++ + ++a ++ Vang03g02210.2 68 VHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLnnpfpdtPKQPSDEKRPTSGQRGVQPQAFDDADGDT 162 6**********************************************************776655522222222333333333322333333333 PP TCP 95 a.kskksqksaasalnlak 112 + ++++++s++ l+l+k Vang03g02210.2 163 NfLHQSQNQSQN--LSLSK 179 323333333333..44444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 26.56 | 60 | 123 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.6E-32 | 69 | 176 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
LLILRTGESY KQADTRRSQK EFGADPRPIC KICCFSLKTK REDLDQRLIP FKVLSVKQHG 60 QTQILSAVHS KVMTSKGLRD RRVRLSVTTA IQFYDLQDRL GYDQPSKAVE WLINAASDAI 120 SELPSLNNPF PDTPKQPSDE KRPTSGQRGV QPQAFDDADG DTNFLHQSQN QSQNLSLSKG 180 TLQSNSPSFL PHLQSKNEHA NCFYQKSNIF GPNSQWAKIL NLLMYEGLWS LFFVGAASCV 240 PSLASA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 70 | 124 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 70 | 124 | 1 | 55 | Putative transcription factor PCF6 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00639 | PBM | Transfer from Lj6g3v1946420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g02210.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 5e-31 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |