PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g02210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 266aa MW: 29763.6 Da PI: 9.2517 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.9 | 5.4e-32 | 87 | 198 | 7 | 112 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssgkaaksa 94 hsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ + +++ e + s + ++ + ++a ++ Vang03g02210.1 87 VHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLnnpfpdtPKQPSDEKRPTSGQRGVQPQAFDDADGDT 181 6**********************************************************776655522222222333333333322333333333 PP TCP 95 a.kskksqksaasalnlak 112 + ++++++s++ l+l+k Vang03g02210.1 182 NfLHQSQNQSQN--LSLSK 198 323333333333..44444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 26.56 | 79 | 142 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.0E-32 | 88 | 194 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
LFSFPFLFSR PQHLPQNPIQ QCSKTGESYK QADTRRSQKE FGADPRPICK ICCFSLKTKR 60 EDLDQRLIPF KVLSVKQHGQ TQILSAVHSK VMTSKGLRDR RVRLSVTTAI QFYDLQDRLG 120 YDQPSKAVEW LINAASDAIS ELPSLNNPFP DTPKQPSDEK RPTSGQRGVQ PQAFDDADGD 180 TNFLHQSQNQ SQNLSLSKGT LQSNSPSFLP HLQSKNEHAN CFYQKSNIFG PNSQWAKILN 240 LLMYEGLWSL FFVGAASCVP SLASA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-22 | 89 | 143 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-22 | 89 | 143 | 1 | 55 | Putative transcription factor PCF6 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00639 | PBM | Transfer from Lj6g3v1946420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g02210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 8e-31 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |