PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang03g02070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 569aa MW: 59987.3 Da PI: 8.5735 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.4 | 7.6e-11 | 49 | 74 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C +G+rC+++H++ Vang03g02070.1 49 DEADCTYYLRTGFCGFGSRCRYNHPR 74 6799********************96 PP | |||||||
2 | zf-CCCH | 35.1 | 2.2e-11 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rt tCk+G++Ck++H++ Vang03g02070.1 95 QPVCQYYMRTRTCKFGSSCKYHHPR 119 689********************96 PP | |||||||
3 | zf-CCCH | 36 | 1.1e-11 | 140 | 164 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ Vang03g02070.1 140 GEKECSYYVKTGQCKFGATCKFHHP 164 7899********************9 PP | |||||||
4 | zf-CCCH | 29.6 | 1.2e-09 | 438 | 461 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++a+ G Ck+G+ CkF H++ Vang03g02070.1 438 SPCTHYAQHGVCKFGSACKFYHSM 461 69********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.596 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-4 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-4 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.455 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-9 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 95 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-4 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 138 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-6 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-6 | 140 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-9 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 144 | 163 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0033 | 434 | 461 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 435 | 462 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 437 | 464 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-7 | 438 | 460 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-5 | 439 | 461 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MEQYGRSSEG SRSDPSPEWA GPGAQTGLEE PMWQLGLGAA EESYPQRPDE ADCTYYLRTG 60 FCGFGSRCRY NHPRDRGTFV GAERTAGEYP ERVGQPVCQY YMRTRTCKFG SSCKYHHPRL 120 AGGSATPVSL NYYGYPLRPG EKECSYYVKT GQCKFGATCK FHHPVPAGVQ IPAPSPVAPV 180 SPLPVPVPSP LYSTMQPPPG PSSQQIGVLV ARPPLLPGSL VQSPYGPVVL SPAMVPISGW 240 GPYQASGTGA VLPSGTPNVG SAQLYGMTQL PSSAAAYPGP YQLPGSLVGP SSSNQKEQAF 300 PERSNQPDYQ YYPKTGEVKV GPSYRYHPPP EMTAPKANVT LSPGGLPLRP GLQARVGNKN 360 ADPKLGMLFE IVNSPAYNLS QYSEISIPHR GEGGARVGKF VNGCIGTKTE VCGRIKLGIN 420 QPLSPYIFSS SQHHQGASPC THYAQHGVCK FGSACKFYHS MGSLSYSPSA SSLADMPVAP 480 YPVGSTIGTL APSSSSSELR LELSSGSNKE SVPSRMSSSS GMLTGSIGLT LSTGEPISQS 540 NSQPSAPSLD PLATATSTTT SNVSHTSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang03g02070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022643038.1 | 0.0 | zinc finger CCCH domain-containing protein 34 isoform X1 | ||||
Swissprot | Q6NPN3 | 1e-122 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A3Q0FH24 | 0.0 | A0A3Q0FH24_VIGRR; zinc finger CCCH domain-containing protein 34 isoform X1 | ||||
STRING | XP_007147888.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-114 | C3H family protein |
Publications ? help Back to Top | |||
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