PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0364s00040.1
Common NameLR48_Vigan04g184100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 477aa    MW: 51872.4 Da    PI: 6.6455
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0364s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.91.4e-21125217189
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+ltpsd+++ g +++p+ +a++          ++ +   l+++d +g +We+++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F+  +
  Vang0364s00040.1 125 FAKILTPSDANNGGGFSVPRFCADSVfpklnfgADPPVQ--NLSVTDVHGFTWEFRHIYRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFM--K 213
                       89*****************9999999*****95444445..7************************************************..3 PP

                       S.SE CS
                B3  87 r.se 89 
                       r + 
  Vang0364s00040.1 214 RaEP 217
                       3354 PP
2Auxin_resp92.38.2e-31219300383
        Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       + a+ ++ FevvY+P+a++seFvvk+e v +a+++ +s GmR+km++et+dss+ ++ +Gtv++vs  d+ +W  S+Wr+L+
  Vang0364s00040.1 219 ELAARQMKFEVVYYPKAGWSEFVVKIEVVDAAMRIAWSEGMRVKMSVETDDSSRMTWfQGTVSAVSSHDNGQWCSSPWRMLQ 300
                       6788999*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-26120216IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-29120214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-17124211No hitNo description
PfamPF023621.6E-19125217IPR003340B3 DNA binding domain
SMARTSM010191.5E-13125226IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251125228IPR003340B3 DNA binding domain
PfamPF065072.0E-28218300IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MPRQSPPSQP QQPSELEPAI WQACAGPSVE IPKPNSMVYY FPQGHFDQAS SAPKNLSSHL  60
LAKPFIICSV VSVNFLADPL TDEVFTKMVL QPVGNNLPVE SFHTPAFAPP AVAPPPNDDN  120
EVVSFAKILT PSDANNGGGF SVPRFCADSV FPKLNFGADP PVQNLSVTDV HGFTWEFRHI  180
YRGTPRRHLL TTGWSTFVNN KKLVAGDSVL FMKRAEPAEL AARQMKFEVV YYPKAGWSEF  240
VVKIEVVDAA MRIAWSEGMR VKMSVETDDS SRMTWFQGTV SAVSSHDNGQ WCSSPWRMLQ  300
VELVSPPPAL HPAFPPAKRL RTANGYGVLT NGEGGTFSVA GVTNSAMVQL NPAYLGYSTF  360
PAGMQGARHD VFSASSFPSY PRDLSHLCID NSFGNNTFSR QKNLPTELHV GGNSQSDELS  420
PDSSFHSCVT DTLGNTNNSI KPAPDSFQLF GAVIRKEQPV QNDLTGTGRN FFPAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-57430643373Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0364s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420833.10.0PREDICTED: auxin response factor 17
TrEMBLA0A0L9UFX20.0A0A0L9UFX2_PHAAN; Auxin response factor
TrEMBLA0A0S3RDB60.0A0A0S3RDB6_PHAAN; Auxin response factor
STRINGXP_007136195.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-85auxin response factor 17
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]