PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0363s00060.1
Common NameLR48_Vigan03g165600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 200aa    MW: 23131.9 Da    PI: 7.5447
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0363s00060.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.91.9e-171663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Vang0363s00060.1 16 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 63
                      79********************************************97 PP
2Myb_DNA-binding52.61e-1669112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eE++l+ ++++++G++ W++Ia+ ++ gRt++++k++w++
  Vang0363s00060.1  69 RGNITPEEQLLIMELHAKWGNR-WSKIAKQLP-GRTDNEIKNFWRT 112
                       7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-24966IPR009057Homeodomain-like
PROSITE profilePS5129417.2741163IPR017930Myb domain
SuperFamilySSF466893.74E-3013110IPR009057Homeodomain-like
SMARTSM007177.2E-131565IPR001005SANT/Myb domain
PfamPF002492.4E-161663IPR001005SANT/Myb domain
CDDcd001673.13E-101863No hitNo description
PROSITE profilePS5129424.33164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2467119IPR009057Homeodomain-like
SMARTSM007172.1E-1468116IPR001005SANT/Myb domain
PfamPF002491.3E-1569112IPR001005SANT/Myb domain
CDDcd001672.02E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDKKLSSVSH DPEVRKGPWT MEEDLILINY IANHGEGVWN SLAKAAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI MELHAKWGNR WSKIAKQLPG RTDNEIKNFW RTRIQKHMKQ  120
SESFQQQSNS ETNDHQAFTS QVSTIAEPME TYSPSCYQGM LEPFSTQFHT NPDQSSCCTN  180
DNNNYWSMED ILSMQLANY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-271111822128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0363s00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417480.11e-151PREDICTED: myb-related protein 305-like
SwissprotP813917e-86MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A0L9U7531e-149A0A0L9U753_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVR01e-149A0A0S3RVR0_PHAAN; Uncharacterized protein
STRINGXP_007140964.11e-145(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-79myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]