PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang0349s00210.2 | ||||||||
Common Name | LR48_Vigan01g114200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 550aa MW: 60641.9 Da PI: 5.6008 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 446.3 | 3.5e-137 | 273 | 489 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 pppsaflgpkcalwdc+rpaqg +w+qdycssfha+lalneg+pg++pvlrp+gi+lkd+llfaalsak+qgk+vgipecegaatakspwna+ Vang0349s00210.2 273 PPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMAPVLRPGGIGLKDNLLFAALSAKAQGKDVGIPECEGAATAKSPWNAP 365 89******************************************************************************************* PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfdls+legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyei+++da+alyrle Vang0349s00210.2 366 ELFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDACALYRLE 458 ********************************************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lklvd+kk++k+k+++ds+adlqk++grl+a Vang0349s00210.2 459 LKLVDGKKNSKTKLASDSVADLQKQMGRLSA 489 *****************************97 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 550 aa Download sequence Send to blast |
LEYASDHDNL PASCVHFFGG FAGRTSGLAM KKVPKNSCKS ASHRLFKDKA KNRVDDLQVM 60 FLDLQFARKE SRTVDAAVLE EQVHQMLREW KAELNEPSPA SSLQQGGSLG SFSTDICRLL 120 QLCDEEDDAS SPLAAPKPEP NDQTLQARGK VGFQEMDQLN TANLQSGLGG PEGYYSDRDP 180 LVVGFDLSTV ARMMGLGEGQ QQHDFPLIDE CKNSTSSVQN AAANNPDGHA LEYHQFDLHQ 240 DYDHGFYTGF NGTGYCEEDA IPHISSYLPS ICPPPSAFLG PKCALWDCPR PAQGLDWCQD 300 YCSSFHAALA LNEGPPGMAP VLRPGGIGLK DNLLFAALSA KAQGKDVGIP ECEGAATAKS 360 PWNAPELFDL SVLEGETIRE WLFFDKPRRA FESGNRKQRS LPDYSGRGWH ESRKQVMNEF 420 GGLKRSYYMD PQPLNHFEWH LYEYEISKCD ACALYRLELK LVDGKKNSKT KLASDSVADL 480 QKQMGRLSAE FPHDNKRAAK GRTKVNSKVG IGGVYSASHR VTTLNGAYEY GLAAPYDYLV 540 ENMGDYYGT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang0349s00210.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017441601.1 | 0.0 | PREDICTED: transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0L9TMC5 | 0.0 | A0A0L9TMC5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153891.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|