PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g08600.1 | ||||||||
Common Name | LR48_Vigan01g059100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 197aa MW: 22527.9 Da PI: 8.4853 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 3.9e-12 | 36 | 83 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + +Er+RR+++++ f++L ++lP++ +s+ s + +A++YIk+Lq Vang02g08600.1 36 KLVERNRRNQMKDLFSKLNSVLPHQ---SSREgISRPDQIGEAIDYIKNLQ 83 679*********************8...77888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.553 | 30 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-13 | 34 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.77E-7 | 35 | 87 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-12 | 35 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-6 | 36 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 36 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MVSHHISYPR TLTLYEWLIH CILMENNPSS STSDRKLVER NRRNQMKDLF SKLNSVLPHQ 60 SSREGISRPD QIGEAIDYIK NLQIKLEKMK EKKSNLTDIV RSRTASMNME LKSPQFKIQQ 120 MGSVLEVVLV TGLDFHFIFN ETIRVLQEEG SDIVNASYTV VENAVLHKIH CQVEESVNGA 180 SRISEKLKNL CQWSVA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g08600.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434516.1 | 1e-124 | PREDICTED: uncharacterized protein LOC108341326 | ||||
TrEMBL | A0A0L9TKN2 | 1e-143 | A0A0L9TKN2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007159331.1 | 3e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-43 | bHLH family protein |
Publications ? help Back to Top | |||
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