PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang02g08480.1

Common Name

LR48_Vigan01g060600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HSF

Protein Properties

Length: 212aa MW: 24488.7 Da PI: 7.4675

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang02g08480.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.6	1.1e-34	41	135	2	102
HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl k+y++le +e++++++sw+e+g++fvv+ + ef+++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ weFkh++F++g +++ Vang02g08480.1 41 FLLKTYDLLEegeSEDMTRIVSWNEEGSAFVVWSPAEFSEHTLPRYFKHNNFSSFIRQLNTYGFKKMSSKR---------WEFKHEKFQRGCRHM 126 9******977778999**********************************************999.........*********** PP XXXXXXXXX CS HSF_DNA-bind 94 lekikrkks 102 l +i rkk Vang02g08480.1 127 LGEITRKKC 135 ****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	8.5E-36	32	127	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.4E-41	37	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.72E-28	38	133	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.5E-30	41	133	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-12	41	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-12	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	83	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.7E-12	95	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MVDNSVLELN LGLGNNNNNN NVVGGHAHAG QSPRQRCPAP FLLKTYDLLE EGESEDMTRI 60 VSWNEEGSAF VVWSPAEFSE HTLPRYFKHN NFSSFIRQLN TYGFKKMSSK RWEFKHEKFQ 120 RGCRHMLGEI TRKKCEPSVF PAYLKSSSEE NATSSTEENN QQLLMEENKN LKKERLELQM 180 QIDECKALEM KLLACLSQFM DTQQTKIRRL C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1hks_A	9e-17	37	133	4	106	HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A	9e-17	37	133	4	106	HEAT-SHOCK TRANSCRIPTION FACTOR
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Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang02g08480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017415089.1	1e-158	PREDICTED: heat stress transcription factor B-2a-like
TrEMBL	A0A0L9TKP9	1e-156	A0A0L9TKP9_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3QZK7	1e-156	A0A0S3QZK7_PHAAN; Uncharacterized protein
STRING	XP_007159323.1	1e-126	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11357	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	3e-38	heat shock transcription factor B2A

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]