PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g05040.1
Common NameLR48_Vigan10g022400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 274aa    MW: 30593.6 Da    PI: 6.6036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g05040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.8e-08166213455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  Vang02g05040.1 166 SHSLAERVRRGKINEKLRCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 213
                     8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.98E-9160217No hitNo description
SuperFamilySSF474591.57E-15160228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15162221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.723162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-5166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAEFSENLQL QSIRPSSFPF LDIDPSMELI NQFIGINQHV IDNSNLTMHN LMPFSCDTFL  60
GPQEPEFPGN LEENFPALVH HVNHNALPVS LPIFQAENEI HEGKKRKSVD LPETSSANST  120
PAVSETGSKI KQSSGKGKRA KSNVTEEEKA KEVVHVRARR GQATDSHSLA ERVRRGKINE  180
KLRCLQNIVP GCYKTMGMAV MLDEIINYVQ SLQHQVEFLS LKLTAASTFY DFNSETDALE  240
TMQRARASEA KELGRYKREG YGGVSCFQPS WPL*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g05040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312560.0KT031256.1 Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439191.10.0PREDICTED: transcription factor BEE 1-like
SwissprotQ8GZ137e-64BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A0L9VHC50.0A0A0L9VHC5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TD350.0A0A0S3TD35_PHAAN; Uncharacterized protein
STRINGXP_007154151.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.17e-64BR enhanced expression 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]