PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g04450.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 198aa    MW: 23044.7 Da    PI: 9.4832
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g04450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.4e-2285144357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Vang02g04450.1  85 SRWNPTREQLRALEELYRRgTRTPSAEQIQHITSQLrrfgNIEGKNVFYWFQNHKARERQ 144
                     7*****************99**************************************97 PP
2Wus_type_Homeobox111.54.7e-3684146365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Pt eQ++ Leely++G+rtP++e+iq+it++L+++G+ie+kNVfyWFQN+kaRerqk+
     Vang02g04450.1  84 SSRWNPTREQLRALEELYRRGTRTPSAEQIQHITSQLRRFGNIEGKNVFYWFQNHKARERQKR 146
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.6E-482149IPR001356Homeobox domain
PfamPF000469.6E-2085144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-985144IPR009057Homeodomain-like
SuperFamilySSF466891.15E-1185147IPR009057Homeodomain-like
CDDcd000863.15E-686146No hitNo description
PROSITE profilePS5007111.53190145IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MWMVGDNEGG EFSMVDHSFN GRKLRPLMPR PMISSNTAPP TTTLSLTHHH GNDFPSQYDY  60
HHLASVAEQN KREQFNGAAP VVVSSRWNPT REQLRALEEL YRRGTRTPSA EQIQHITSQL  120
RRFGNIEGKN VFYWFQNHKA RERQKRRRQM ESEAETPEKK ESDRYCGFQF DAFAWLQFKS  180
TGICFNTEDC KSSGRRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g04450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-166AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439369.11e-118PREDICTED: WUSCHEL-related homeobox 1-like
SwissprotQ6X7K01e-47WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A0L9VHS71e-117A0A0L9VHS7_PHAAN; Uncharacterized protein
STRINGXP_007163960.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-47WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]