PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g04080.1
Common NameLR48_Vigan10g086200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 348aa    MW: 37656.8 Da    PI: 5.9873
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g04080.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.2e-36371272101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  Vang02g04080.1  37 FLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGEKQLLSE 122
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  Vang02g04080.1 123 IQRRK 127
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3727120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-5633126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.41E-3534126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.3E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-3237126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.3E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
LRSSSMAPPP PVEHNNADSS TIASVAADSQ RSIPTPFLTK TFQLVDDQSI DDVISWNDDG  60
STFIVWNPTV FARDLLPKYF KHNNFSSFVR QLNTYGFRKV VPDRWEFSNE CFRRGEKQLL  120
SEIQRRKISL PVTSTSPSTT APATVSVPSS MPLTAIPIIS PSNSGEEQVL SSNSSPSLAP  180
AELVDENERL RKENVQLTKE LAEMRSLCNN IYALMSNYAN TNGNTNGNGN VSYQTDGGAG  240
GAQGSRESGM TAVKPLDLMP TNRISGEEAA ELNPKLFGVA IGAKRAREGG GSGGEEGGGA  300
KKDTVLRLHH QGPGDVKAEP LDCQNHRENQ EAPWLSQCHI ANQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A6e-263712610110Heat shock factor protein 1
5hdn_A6e-263712610110Heat shock factor protein 1
5hdn_B6e-263712610110Heat shock factor protein 1
5hdn_C6e-263712610110Heat shock factor protein 1
5hdn_D6e-263712610110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g04080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017438576.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW48e-93HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0L9VIV60.0A0A0L9VIV6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TBP50.0A0A0S3TBP5_PHAAN; Uncharacterized protein
STRINGXP_007152318.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-83heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]