PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g03640.1
Common NameLR48_Vigan10g080500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 245aa    MW: 28172.8 Da    PI: 7.2033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g03640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.1e-1573125155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ h+e+Er+RR+++ ++++ Lr+llP ++   ++K s ++   +Av+YIk++q
  Vang02g03640.1  73 KKMIHKEIERQRRQEMATCYASLRSLLPLQF--IKGKRSISDHMNEAVNYIKHMQ 125
                     5788*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1469144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.01172124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.95E-1172129No hitNo description
PfamPF000104.8E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1274144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-678130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
LRMFPFQRGN ELVIQFSNSP HHHQQHEISQ DLILDDYASL DDNLSGKNFS RAQSENLFYE  60
PNKKNHDSNE HMKKMIHKEI ERQRRQEMAT CYASLRSLLP LQFIKGKRSI SDHMNEAVNY  120
IKHMQNNIKE LVAKRDELKK LSSHSNMENS HEGLHTSCNF TVHESNDVIG IEITSGFIEE  180
RPKVSKLLQL LIQEGLEVVS CLSSEVNGRL LHSVQCEVNS SNCLDLSELR RKISKAFPAF  240
RCSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g03640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439392.11e-179PREDICTED: transcription factor bHLH118-like
TrEMBLA0A0L9VIT91e-177A0A0L9VIT9_PHAAN; Uncharacterized protein
STRINGXP_007152370.11e-154(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.18e-42bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]