PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G25410.1 | ||||||||
Common Name | BHLH126, EN3, T30C3.80 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 25427.8 Da PI: 9.6138 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30 | 9.4e-10 | 44 | 93 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + f++Lr++lP ++K ++ + Av++Ik+ AT4G25410.1 44 KLLHRDIERQRRQEMATLFATLRTHLPLkY---IKGKRAVSDHVNGAVNFIKD 93 6679************************77...9999999***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-12 | 39 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.566 | 42 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-8 | 44 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.98E-8 | 47 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MDPYKNLNPK GYQRQRPFSS AGESGGSGGS GTAHETDDNK KKKKLLHRDI ERQRRQEMAT 60 LFATLRTHLP LKYIKGKRAV SDHVNGAVNF IKDTEARIKE LSARRDELSR ETGQGYKSNP 120 DPGKTGSDVG KSEPATVMVQ PHVSGLEVVV SSNSSGPEAL PLSKVLETIQ EKGLEVMSSF 180 TTRVNDRLMH TIQVEVNSFG CIDLLWLQQK LVEDLILSTG KNQSLLEISL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240256064 | 0.0 | ||||
Genevisible | 254064_at | 0.0 | ||||
Expression Atlas | AT4G25410 | - | ||||
AtGenExpress | AT4G25410 | - | ||||
ATTED-II | AT4G25410 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G25410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G25410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493700 | 0.0 | AB493700.1 Arabidopsis thaliana At4g25410 mRNA for hypothetical protein, partial cds, clone: RAAt4g25410. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001320062.1 | 1e-163 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9STJ6 | 1e-164 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A178URA1 | 1e-159 | A0A178URA1_ARATH; Uncharacterized protein | ||||
STRING | AT4G25410.1 | 1e-170 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 | Representative plant | OGRP1638 | 8 | 38 |
Link Out ? help Back to Top | |
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Phytozome | AT4G25410.1 |
Entrez Gene | 828644 |
iHOP | AT4G25410 |
wikigenes | AT4G25410 |
Publications ? help Back to Top | |||
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