PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g01880.1
Common NameLR48_Vigan10g009500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 167aa    MW: 18107.5 Da    PI: 4.3567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g01880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-142441055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  Vang02g01880.1  2 RTWGKWVSEIREPRK---KNRIWLGTFATAEMAARAHDVAALTIKG 44
                    46**********854...59*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-28158IPR001471AP2/ERF domain
CDDcd000181.17E-27154No hitNo description
Gene3DG3DSA:3.30.730.106.3E-27153IPR001471AP2/ERF domain
PROSITE profilePS5103219.744152IPR001471AP2/ERF domain
PfamPF008475.1E-9244IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MRTWGKWVSE IREPRKKNRI WLGTFATAEM AARAHDVAAL TIKGSSAILN FPELAASLPR  60
PASNSPRDVQ AAAAKAASME APPPRTPPSP AAAPEDDLGE IVELPPLGSI FDSPDPNTEF  120
VFVDPDEGWP YPQPWCHGIY DGGYFIGDMN MVSMQESESM VLSLWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-142532173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang02g01880.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017439366.11e-120PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ391271e-47TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A0L9VGU71e-118A0A0L9VGU7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TD431e-118A0A0S3TD43_PHAAN; Uncharacterized protein
STRINGXP_007152902.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]