PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang02g00600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 1058aa MW: 116421 Da PI: 6.9669 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.3 | 1.2e-22 | 135 | 236 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ Vang02g00600.1 135 FCKQLTASDTSTHGGFSVPRRAAEKIfphldySMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 226 99*****************************9545444.38************************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ Vang02g00600.1 227 QQLLLGIRRA 236 889****997 PP | |||||||
2 | Auxin_resp | 118.4 | 5.9e-39 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ k++ ++ s+GmRf+m+feteds +rr++Gt++g+sdldpvrW+nS+Wr+L+ Vang02g00600.1 261 AAHAAANSSPFTVFYNPRASPSEFVIPLAKYYKSVCsHQPSLGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344 79******************************998669********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-42 | 125 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-40 | 127 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.17E-18 | 134 | 226 | No hit | No description |
SMART | SM01019 | 9.1E-22 | 135 | 237 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 135 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-20 | 135 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.8E-34 | 261 | 344 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.007 | 943 | 1029 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.08E-5 | 966 | 1023 | No hit | No description |
Pfam | PF02309 | 3.1E-6 | 993 | 1030 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1058 aa Download sequence Send to blast |
MKTHPPQPDG GSAAPNPNPS QESRSINPEL WQACAGPLVN LPPSATHVIY FPQGHSEQVA 60 ASLKKDVDAQ IPNYPNLPSK LLCVLHNLTL HVSSSLSLSL VFASPLINFI IFRLIPKQMK 120 SDLALKSTKP QPDFFCKQLT ASDTSTHGGF SVPRRAAEKI FPHLDYSMQP PAQELVARDL 180 HDNVWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP 240 TNISSSVLSS DSMHIGILAA AAHAAANSSP FTVFYNPRAS PSEFVIPLAK YYKSVCSHQP 300 SLGMRFRMMF ETEDSGTRRY MGTITGISDL DPVRWKNSQW RNLQEIFVFE LSFFSLICVS 360 NGCLVLHFIG QVGWDESTAG EKRSRVSIWE IEPVTAPFFL CPPPFFRSKR PRQPGMPDDD 420 LSDFDNIFKR TMPWLGDEMC MKDPQGLPGL SLAQWMNVQQ HPALASSLQP NFAPSLPGSI 480 LQNIPGADIS RQLGFSAPQI SQSNNVAFNT HRLLQTAQQL DQLQKLPSTS STLGAVLPPQ 540 QQLGDISQQS RQNLANQTIP QSQVQAQLLH PQNIVQTNNI LQQQQPSIQN HQMHRSLSQN 600 PSQQQTIIGQ SQQQNLIQSP IPDHVQQLQM SDNQIQLHLL QKLQQQKQTH LAQQTVLQQP 660 TQLTQIQDQQ RQILDKTHNL SRALTPGQVL EIPPMLQNSL PEANSISNQI TKANFQNSIQ 720 FPQQPKLQQQ QPGLLSGMSG HMGLLPTPTT NNQLSAAGSS ILNGAAGAGQ SVITDDIPSC 780 STSPSANNCA SALPPLINSR LQRNTIVGDD MAQSASTILS SSALETMSSN ANLLKDLQPK 840 SEVKPSLNIS KSQNQGLFGL QSYLNGSAVH TDCLDTSSST TSVCLSQSDA HMHQNNNPLA 900 YNPHPMLFRD NSQDGEVQAD ARGNIPYANN IDSQMGMPLN PDSLLTKGTL GLGKDLSNNF 960 SSEALLGYEE LKQDLARRFG IEGQLEDRQR IGWKLVYVDH ESDVLLVGDD PWEEFVNCVR 1020 CIKILSPQEV QQMSLDGDFG NGGLPNQACS SSDGGNT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-146 | 26 | 392 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang02g00600.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439702.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 19-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A0S3TCW7 | 0.0 | A0A0S3TCW7_PHAAN; Auxin response factor | ||||
STRING | XP_007152995.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6823 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |