PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0259s00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARF | ||||||||
Protein Properties | Length: 725aa MW: 79336.5 Da PI: 7.5851 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 79.4 | 3.6e-25 | 149 | 250 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + Vang0259s00030.1 149 FCKTLTASDTSTHGGFSVPRRAAEDCfppleyS-QQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RG 238 99****************************963.3445679************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+++++r+ Vang0259s00030.1 239 EDGELRLGIRRA 250 9999*****996 PP | |||||||
2 | Auxin_resp | 112.4 | 4.4e-37 | 275 | 356 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s + +F+v YnPr+s+seF+++++k++++l+ ++svG+Rf+m+fete+++err++G++vg++d+dpvrWp+SkWr+L Vang0259s00030.1 275 VVNALSARRAFSVHYNPRVSSSEFIIPIKKFLRSLDYSYSVGTRFRMRFETEEAAERRFTGLIVGITDVDPVRWPGSKWRCL 356 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-42 | 142 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-41 | 143 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-23 | 147 | 249 | No hit | No description |
SMART | SM01019 | 1.4E-23 | 149 | 251 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.704 | 149 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-23 | 149 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-31 | 276 | 356 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
LSLLLLSLSP SCLLLMPALI DLNSATEDHE TPSSRPSSVC LELWHACAGP MISLPKKGTL 60 VVYFPQGHLE QHLHDFPLPA SANIPSHLFC RVLDVKLHAE EGSDEVYCQV VLVPKSEQVH 120 QKLREAEIDA DGEEEDAEAV MKSTTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLEY 180 SQQRPSQELV AKDLHGQEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGED 240 GELRLGIRRA AQLKSGSAIS TFAAEQLNLS SLLDVVNALS ARRAFSVHYN PRVSSSEFII 300 PIKKFLRSLD YSYSVGTRFR MRFETEEAAE RRFTGLIVGI TDVDPVRWPG SKWRCLMVRW 360 DDLEASRHNR VSPWEIEPSG SASTSNKLIS AGLKRTKIGL PSTMLDFQVS NAIGSSDFGE 420 SLRFQKVLQG QEMLGVNTTF DSISGQNHQL SDLRRCYPGS NCPRIAATGN SIGIPQVSSN 480 VSCNGIGFRE SFIFQKVLQG QEILPSQPYG RALSVDEACG NGSFGPFDGY RTLGPSNGWS 540 SHLSNNSSHL HPPVPSGQVS SPSSVLVFQQ AVNPVSNSDY NSKISLMMEG KVHQQLSYTS 600 EAKGGKFLSV PYEPLRGLVQ EGTSSCGVSN LHNQLESSRS HDSISALRAS QELVPTCKSR 660 CRVFGFSLTE GAPVASTEVA GANQSAVTCS GPSFARHGED SFHPMHLHRS KAVGSYCTKG 720 VLQY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-113 | 38 | 385 | 18 | 361 | Auxin response factor 1 |
4ldy_B | 1e-113 | 38 | 385 | 18 | 361 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0259s00030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017406820.1 | 0.0 | PREDICTED: auxin response factor 3-like isoform X1 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A0S3R1G5 | 0.0 | A0A0S3R1G5_PHAAN; Auxin response factor | ||||
STRING | XP_007156488.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4576 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-177 | ARF family protein |