PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0254s00280.1
Common NameLR48_Vigan181s002800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 494aa    MW: 53920.7 Da    PI: 8.019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0254s00280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-13327373455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Vang0254s00280.1 327 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 373
                       799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-2915109IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-15326377No hitNo description
SuperFamilySSF474591.7E-18326386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10327373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-18327386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-17329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MTFGGSDEDN YAFGLDRVTD TEMFFLASMY FSFPRGLGGP GKCFASGKHL WLSDVFKSSF  60
DYCVRSFLAK SAGIQTVVLV PTDMGVVEMG SVRMVGESFE LLQALKSVFS AQASLVPLRI  120
KPITPFDLVS EKRDDNANAP FSGVAIGDKE KNNSSNASNN RVEGNGVPKI FGQDLNSVTQ  180
FREKLAVRKM EERPRAWGAH PNGNSVGFPN GIHGSGWGAG QVVRQLGPPE IHAPRLSTSG  240
ALSVPELANG TRHDFVHNNY QQQQRKAQMQ IDFSGATSRA SGRSIIAESE ISDVEASCKE  300
ERANVADDRR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS  360
LLGDAIAYIN ELQAKLKTME SERERFGSTS MDGSVVEANA RSENHSNGIS DVNVEAAQDG  420
VVVKVSCPID VHPVSKVIQT FKEADIGVVD SKLTAANDTV FHTFVVKSQG PDQLTKEKLI  480
ALFSKESNPI QTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-30321383264Transcription factor MYC2
5gnj_B1e-30321383264Transcription factor MYC2
5gnj_E1e-30321383264Transcription factor MYC2
5gnj_F1e-30321383264Transcription factor MYC2
5gnj_G1e-30321383264Transcription factor MYC2
5gnj_I1e-30321383264Transcription factor MYC2
5gnj_M1e-30321383264Transcription factor MYC2
5gnj_N1e-30321383264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308316RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0254s00280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405826.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A0L9T5640.0A0A0L9T564_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SZJ50.0A0A0S3SZJ5_PHAAN; Uncharacterized protein
STRINGXP_007135266.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-124bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]