PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0236s00370.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 387aa    MW: 42205.2 Da    PI: 10.0656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0236s00370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09235279554
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Vang0236s00370.1 235 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 279
                       99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-15228289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14232289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-7235279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
LGVNTKNRAP LEEKKKERKE KLFCKQDKDT RTHCAKWEAN YPVEKKKAQL SKCKTKKQNQ  60
TKPFSLSASC RFSLPNSFTR FNLDSSRFKL KLLLMANNPS DAPADDFLEQ ILGLPTFASG  120
DSGLSAADVG LSGTTSPAPM MLQLNSADAN AHLTGAAFHA PVYQLGLSLD QGKGGFMKPE  180
EASASGKRYR DDVVDGRAKN VFHGQPMPST MPTAPHPPAI RPRVRARRGQ ATDPHSIAER  240
LRRERIAERI RALQELVPSV NKTDRAAMLD EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL  300
VTDIPLSSVE EEGGEGARNR PAWDKLSNDG TERQVAKLME ENVGAAMQFL QSKALCIMPI  360
SLASAIYQSQ PPDSSSIVKP ETNPPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0236s00370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017442969.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-130UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0L9T4620.0A0A0L9T462_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RY210.0A0A0S3RY21_PHAAN; Uncharacterized protein
STRINGGLYMA19G34360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-110bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]